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Report for CCDS49260.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49260.1 Public Mus musculus 13 Card19 23 108 98 CCDS HistoryNCBI Gene:68480Re-query CCDS DB by CCDS ID:49260.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49260.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048946.6 ENSMUSP00000047569.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048946.6Link to Ensembl Protein Viewer:ENSMUSP00000047569.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000048946Re-query CCDS DB by Protein ID:ENSMUSP00000047569
Original member NCBI NM_026738.2 NP_081014.1 Updated not alive Link to Nucleotide Sequence:NM_026738.2Link to Protein Sequence:NP_081014.1Re-query CCDS DB by Nucleotide ID:NM_026738Re-query CCDS DB by Protein ID:NP_081014
Current member NCBI NM_026738.3 NP_081014.1 Accepted alive Link to Nucleotide Sequence:NM_026738.3Link to Protein Sequence:NP_081014.1Re-query CCDS DB by Nucleotide ID:NM_026738Re-query CCDS DB by Protein ID:NP_081014Link to BLAST:NP_081014.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081014.1 183 Q9D1I2 183 100% 0 0

Chromosomal Locations for CCDS 49260.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 49203120 49203235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49203718 49203789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49203929 49203988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49205192 49205345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49208004 49208146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49215937 49215943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (552 nt):
ATGACAGATCAGACCTACTGTGACCGGCTGGTACAGGACACTCCTTTCCTGACGGGACAGGGTCGCCTGA
GCGAGCAACAAGTGGACAGGATCATCCTCCAGCTGAACCGTTACTACCCACAGATCCTTACCAACAAGGA
GGCTGAAAAGTTCCGGAACCCCAAGGCATCCCTGCGCGTACGGCTCTGTGACCTCCTGAGCCATCTACAG
CAGCGTGGGGAACGGCACTGTCAGGAATTTTACCGAGCTCTGTACATCCATGCCCAGCCCCTGCACAGCC
ACCTGCCCAGCCGCTACTCTCCTCAAAACTCAGATTGCAGAGAGCTGGACTGGGGCATCGAGAGCCGTGA
GCTGAGTGACAGGGGACCCATGAGCTTCCTGGCAGGCCTGGGCCTGGCAGCGGGCCTGGCCCTCCTCCTC
TACTGCTGCCCTCCAGACCCCAAAGTGCTGCCCGGAACCCGGCGCGTCCTTGCCTTCTCACCTGTCATCA
TTGACCGGCATGTCAGCCGCTACCTGCTGGCTTTCCTGGCAGATGACCTCGGAGGACTCTGA

Translation (183 aa):
MTDQTYCDRLVQDTPFLTGQGRLSEQQVDRIILQLNRYYPQILTNKEAEKFRNPKASLRVRLCDLLSHLQ
QRGERHCQEFYRALYIHAQPLHSHLPSRYSPQNSDCRELDWGIESRELSDRGPMSFLAGLGLAAGLALLL
YCCPPDPKVLPGTRRVLAFSPVIIDRHVSRYLLAFLADDLGGL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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