NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS36241.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36241.1 Public Mus musculus 11 Tefm 23 108 98 CCDS HistoryNCBI Gene:68550Re-query CCDS DB by CCDS ID:36241.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36241.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050207.9 ENSMUSP00000059304.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050207.9Link to Ensembl Protein Viewer:ENSMUSP00000059304.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000050207Re-query CCDS DB by Protein ID:ENSMUSP00000059304
Original member Current member NCBI NM_183275.2 NP_899098.2 Accepted alive Link to Nucleotide Sequence:NM_183275.2Link to Protein Sequence:NP_899098.2Re-query CCDS DB by Nucleotide ID:NM_183275Re-query CCDS DB by Protein ID:NP_899098Link to BLAST:NP_899098.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_899098.2 364 Q5SSK3 364 100% 0 0

Chromosomal Locations for CCDS 36241.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 80136836 80137279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80137918 80138067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80139866 80140323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80142077 80142119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1095 nt):
ATGGCTTGGAGGACAAACCTTGCTTGCCTCATCAAGGCCGGAGGGAGGAGATGGTTTCCAGTCCCAGAGT
ACTCATCCCTGCCTCCAGTCCTAAATAACACCTGCTCTGTGAGGAAATCCACTGCACCTGAGAAACGTGT
TGCCAGTGTTGCTGCTTGTGATACAGATGGAAAGGAGCCCGGGAATCCATTGGACAGGCTCTTCTCCCTG
GAGCAGCAGGCTTCTATCTTACAAGTGCTGAATACAGCTTCTGATAAAGAACTGGAAGCTTTCAGGTTGC
TTCGAGGAAGGAAGTCCGTCAATATTGTAGAACACAGAAAGAAGTTTGGGCCGTTTCAGAGGTTGGAGAA
TTTGATAGACGTGCCCTTGATCCAATATAAAACTGCTGTTGAAGTTTGTAACTCCATTCTCTGTCCGGAG
AACAGACGGAGGAAAAAGTCACAGGAGAAGTGGCTGCTGAGAAAGTTCATCAAGCCAGGTGTAGAGCAAG
AGAGACTTAAGGCAGTTAAGAGTATCGTATCTATTGTTTTTGGTACTCGAAGAATTGCATGGGCTCACCT
TGACCGGAGACCGACTGTGCTGGACTGGCAGCAGACTGAGTGCTGGAAATTAACTAACAAAACATACCCA
ACGTCCTTTTATCTGGAAGAGATTTCTTCAGTCATTTCAAAGATACCTAAAGCAGATCTCTACATTTTGG
AAAAATCAGGACTTTCCATTCAGAACACATCTCTGCTTCCTATACTGTTACACTTTCTTATCACGGAAGC
CATGCTGTATGCCTTACTCAACAAAACTTTTGCCGAGGATGGCCAGCACCGCGTGCTGAGCATAAATCGA
AATGCGGTGGGCAAGCACTTTGACCTGATGATCGGCGACACGAGGACGAGTGGGAGGGAGCTAGTGAAGC
AGTTCCTCTCTGAGTCTGTGCTGAAGGAGCGGCCTCGGGTGTTCTTCCCACAGGACCTCTTAGTGCAGTA
CAGACAGAAGGTTGTCAAGAGCTCATACCGGATTGAAGAGTTGTATGACTCATTATTACAAGCTGTTGCT
TTTTATGAGTTAGTTTTTGGCAAAGACTCAGAGCTCAAATGTTAA

Translation (364 aa):
MAWRTNLACLIKAGGRRWFPVPEYSSLPPVLNNTCSVRKSTAPEKRVASVAACDTDGKEPGNPLDRLFSL
EQQASILQVLNTASDKELEAFRLLRGRKSVNIVEHRKKFGPFQRLENLIDVPLIQYKTAVEVCNSILCPE
NRRRKKSQEKWLLRKFIKPGVEQERLKAVKSIVSIVFGTRRIAWAHLDRRPTVLDWQQTECWKLTNKTYP
TSFYLEEISSVISKIPKADLYILEKSGLSIQNTSLLPILLHFLITEAMLYALLNKTFAEDGQHRVLSINR
NAVGKHFDLMIGDTRTSGRELVKQFLSESVLKERPRVFFPQDLLVQYRQKVVKSSYRIEELYDSLLQAVA
FYELVFGKDSELKC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH