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Report for CCDS40363.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40363.1 Public Mus musculus 8 Cilp2 23 108 98 CCDS HistoryNCBI Gene:68709Re-query CCDS DB by CCDS ID:40363.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40363.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057831.7 ENSMUSP00000061544.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057831.7Link to Ensembl Protein Viewer:ENSMUSP00000061544.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000057831Re-query CCDS DB by Protein ID:ENSMUSP00000061544
Original member Current member NCBI NM_026818.2 NP_081094.2 Accepted alive Link to Nucleotide Sequence:NM_026818.2Link to Protein Sequence:NP_081094.2Re-query CCDS DB by Nucleotide ID:NM_026818Re-query CCDS DB by Protein ID:NP_081094Link to BLAST:NP_081094.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081094.2 1162 D3Z7H8 1162 100% 0 0

Chromosomal Locations for CCDS 40363.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 69880858 69883208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69883300 69883457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69883991 69884099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69884287 69884565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69885388 69885543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69885996 69886268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69886434 69886532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69887288 69887351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3489 nt):
ATGGCATCACCTCTGCCCTTGCTCTATCTCTGCCTTGCCGCCTTACACCTAGCGGGAGCGCGAGATGCCA
CC
CCCACCGAGGAGCACACTTCAACCGCCAGGGGTCTTCAGGGACGGCCGCCAGATACCGGCCAGCCCTC
G
CCAGCCCTGGAAGATTGGGAGGAGGCCAGCGAGTGGACGTCGTGGTTCAACGTGGATCACCCGGGAGGA
GAT
GGCGACTTCGAGAGCCTGGCCGCCATTCGATTCTACTATGGTCCCGCGCGGGTGTGCCCGAGACCAC
TG
GCACTGGAGGCGCGCACCACCGACTGGGCGCTACCAGCTGCAATGGGCGAAAGGGTGCACGCCAACCC
A
GAGCGTGGCTTTTGGTGTCTCAATCGTGAGCAGCCTCGAGGCCGCCGCTGCTCCAACTACCACGTGCGC
TTC
CGCTGCCCACTGGAGGCGGCTTGGGGCGCTTGGGGAGCGTGGGGCCTCTGCTCCAAGAGTTGCGGGC
TA
GGTCGTCGCCTGCGCCGCCGCAGCTGTCAAAGCTCCTCTGGGGACACGTGTCCCGGGAGCCCCCAGGA
G
GCGCAGAAGTGCGTGAGATCCCGTTGTCCAGGGTGTAGCTCCGACACCTGCGGGTGCCCCAACCACATC
CTC
CTGGGTTCAGTGGTCACCCCATCTGGGCGACCGCTGTCAGGAGCCAGGGTCTCCCTGAGAACCCGAC
CT
GGAACCATAGCCACCAGCGGTACCCATGGAACCTTCCAAGTGCCCGGAGTCTGCGCGGGCAGCAAGGC
C
AGTGTCAGCGCCCAGATGAATGGGTTCTCTGCTGGCACAGCGCAGGCTCACGCCAACAGCTCCAACACA
GCC
ACAGTCACCATCATCCTTGAAGAGTTAGGGAAGCCGTACCTGGTAAAGCACCCTGAGTCTCGAGTTC
GA
GAGGCAGGTCAGAATGTGACCTTCTGCTGCAAGGCCTCGGGGACACCCATGCCCAAGAAATATTCCTG
G
TTCCACAACGGGACTCTCCTGGACCGACGCCAGCAGGGGTCTGGGCCACACCTAGAGCTCCAGGGGCTT
CAC
CAGGCGCAGGCAGGGGAGTACCACTGCAAGGCCTGGAACGAGGCGGGCACGGTGCGATCCCGCGCAG
CC
CTCCTCACGATACTCGCTCCCGGCCAGCAGGCCTGTGACCCCCGACCTCAGGAACACCTGATCAAGCT
T
CCGGACGATTGCGGCCAACCCGGAGGCGGCCCCACGTACCTAGACGTGGGTCTGTGCGCGGACACGCGC
TGT
CCGGGCCCTGTGGGCTCAGGCCCTCGCTGTGGGGACGCGGGCTCTCGATGCTGCTCAGTGCTGCGCC
TG
GAGAGCAGGGACATCCGCTGCTCCGGCTACGTGCTCCCGGTGAAGGTGGTGGCCGAGTGTGGCTGTCG
C
AAGTGCCTGCCCCGTCGGGGACTGGTACGGGGCCGCGTGGTGGCTGCGGATTCCGGGGAGCCCCTGCGT
TTC
GCCAGGATACTGCTGGGCCGCGCACCCATCGGCTTCACCTCCTACCAGGGCGACTTCACCATCGAGG
TG
CCGCCAGCCACCGAGCGCCTCGTGGTGACTTTCGTGGACCCGAGTGGAGACTTCGTAGACAGCGTCCG
C
GTGCTGCCTTTTGACCCTCGCGGAGCCGGTGTGTACCACGAGATCCGCGCGCTGCGCAAGGCGGCCGCA
GTG
CTGTTGGACGCGGAGCGGGGCGGTGAAATCCCGCTGGGCAGCACAGAGGAGGCGCCAGCGCTAGGCG
AG
CTAGTCCTGCCGCCCGGGACCTTCCACCACCCTGACGGCCGTCCCTACACGGGGCCCGTGGAGGCTCG
T
GTCACTTTCGTGGACCCTCGTGACCTGGCGTCGGCGTCCGCGGCGTCCAGCGACCTGCGGTTCCTGGAC
AGC
GCGGGTGAGCTGGCGCCTCTGCGAACCTATGGCATGTTTGCAGTGGACCTGCGCGCACCCGGCTCCA
CG
GAGCAGCTGCACGTGGCGCGCGCGGACGTGCACGTGGACGCCGACCACGTGCGCATGCCCGGTCACGC
C
GAGGCCCTGGCACTCTGGTCGCTGGACCCGGAGACCGGCCTGTGGGAGGAGGAGGGGTCTGAGCAAGGA
AGC
GGCGGCTTCCGGCGTGAGACGGCGGCGGCGCGCGTGCGCAGGGAGGAGCGCGCGTTTCTCGTGGGCG
CG
CTCACCATGCGCGAGCGCCGCTTGTTTAACCTAGACGTGCCTGAGCGGCGACGGTGCTTCGTGAAGGT
T
CGCGCCTACGGCACGGATCGTTTCGCGCCCGCAGAGCAGGTGCAGGGCGTGGTGGTGACGCTGCTCAAC
CTG
GAGCCCGCGCCCGGCTTCACGGCCAACCCACGCGCGTGGGGTCGCTTCGACAGCGCGGTCACAGGGC
CC
AACGGCGCGTGCGTGCCAGCCTTCTGCGACGCCGAGAAGCCCGACGCCTACACGGCCTTTGTGACCGC
T
GCTCTGGGAGGCGAGGAGCTGGAGGCCGCGCCATCGCGGCCACGCGCGACCGCGGCCGTCGTGGGCGTG
GCG
CAGCCCTACCTGGAGCGCCTAGGCTACCAGCGCACTGATCACGACGACCCTGCGCTCAAACGCACTG
GC
TTCCGCTTGAACCTTGCGCGTCCACGCGCGGGCCACGAGTCTGAGGCGCACGGGCCCGTGTATCCGTG
G
CGCCGCCTGCGCGACTGCGAGGACGCGCCAGTCACTGACAGTCACTTCCGATTCTCGCGCGTGGAGGCG
GAC
AAGTACGAGTACGACGTGGTGCCGTTCCACGAGGGAGCGCCCGCCTCTTGGACCGGCGACCTGCTGG
CC
TGGTGGCCCAACCCGCAGGAGTTCCGCGCGTGCTTCCTGAAGGTGCGGCTGCAGGGCCCGCAGGAGTA
C
ATGGTGCGTTCACACAACGCAGGTGGCACCCACGAAGCCACACGCGGCCGCCTCTACGGGCTGCGCGAC
ACC
CGCAGCGTGCGCCACCCTGAGCGCCCCGGTGCCTCGGCTGCCTGCGTGGAGTTCAAGTGCGGCGGCA
TG
TTGTTTGACCAGCGCCAGGTGGACAGGACGCTGGTAACTGTGACCCCACAGGGCAGCTGTCGCCGCGT
G
GCCGTCAACACGCTTCTGCAGGACTATCTAGCCAGGCACCCGCCGCTCGCCGCTGCTGATGACCCCGCC
GCG
TTCGCCATGCTGGCTCCGCTCGACGCTCTGGGCCACAACTATGGCGTCTACACGGTCACCGACCAGA
GC
CCACGTTTGGCCAAGGAAATTGCTATCGGCCGCTGCTTCGACGGCTCTTCTGATGGCTTCTCGCGGGA
G
ATGAAAGCGGACGCGGGCACGGCAGTCACCTTCCAGTGCCGAGAGCCGCCCGCCAGACCCAGCCTCTTC
CAG
CGGCTGCTGGAGAACCCTTCATCAGCGCTTGGCGACATCCGTAGGGAGATGGGCCAAGCCACCCGCT
AT
TCCCGGGTTAACCAAACCCAGGCTGGAGACACCGGCCCCTTCGGCCCTGGACAGTGA


Translation (1162 aa):
MASPLPLLYLCLAALHLAGARDATPTEEHTSTARGLQGRPPDTGQPSPALEDWEEASEWTSWFNVDHPGG
D
GDFESLAAIRFYYGPARVCPRPLALEARTTDWALPAAMGERVHANPERGFWCLNREQPRGRRCSNYHVR
F
RCPL
EAAWGAWGAWGLCSKSCGLGRRLRRRSCQSSSGDTCPGSPQEAQKCVRSRCPGCSSDTCGCPNHI
L
LGSVVTPSGRPLSGARVSLRTRPGTIATSGTHGTFQVPGVCAGSKASVSAQMNGFSAGTAQAHANSSNT
A
TVTIILEEL
GKPYLVKHPESRVREAGQNVTFCCKASGTPMPKKYSWFHNGTLLDRRQQGSGPHLELQGL
H
QAQAGEYHCKAWNEAGTVRSRAALLTIL
APGQQACDPRPQEHLIKLPDDCGQPGGGPTYLDVGLCADTR
C
PGPVGSGPRCGDAGSRCCSVLRLESRDIRCSGYVLPVKVVAECGCRKCLPRRGLVRGRVVAADSGEPLR
F
ARILLGRAPIGFTSYQGDFTIEVPPATERLVVTFVDPSGDFVDSVRVLPFDPRGAGVYHEIRALRKAAA
V
LLDAERGGEIPLGSTEEAPALGELVLPPGTFHHPDGRPYTGPVEARVTFVDPRDLASASAASSDLRFLD
S
AGELAPLRTYGMFAVDLRAPGSTEQLHVARADVHVDADHVRMPGHAEALALWSLDPETGLWEEEGSEQG
S
GGFRRETAAARVRREERAFLVGALTMRERRLFNLDVPERRRCFVKVRAYGTDRFAPAEQVQGVVVTLLN
L
EPAPGFTANPRAWGRFDSAVTGPNGACVPAFCDAEKPDAYTAFVTAALGGEELEAAPSRPRATAAVVGV
A
QPYLERLGYQRTDHDDPALKRTGFRLNLARPRAGHESEAHGPVYPWRRLRDCEDAPVTDSHFRFSRVEA
D
KYEYDVVPFHEGAPASWTGDLLAWWPNPQEFRACFLKVRLQGPQEYMVRSHNAGGTHEATRGRLYGLRD
T
RSVRHPERPGASAACVEFKCGGMLFDQRQVDRTLVTVTPQGSCRRVAVNTLLQDYLARHPPLAAADDPA
A
FAMLAPLDALGHNYGVYTVTDQSPRLAKEIAIGRCFDGSSDGFSREMKADAGTAVTFQCREPPARPSLF
Q
RLLENPSSALGDIRREMGQATRYSRVNQTQAGDTGPFGPGQ




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser