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Report for CCDS36430.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36430.1 Public Mus musculus 12 Cdhr3 23 108 98 CCDS HistoryNCBI Gene:68764Re-query CCDS DB by CCDS ID:36430.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 36430.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095774.2 ENSMUSP00000093449.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095774.2Link to Ensembl Protein Viewer:ENSMUSP00000093449.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000095774Re-query CCDS DB by Protein ID:ENSMUSP00000093449
Original member Current member NCBI NM_001024478.1 NP_001019649.1 Accepted alive Link to Nucleotide Sequence:NM_001024478.1Link to Protein Sequence:NP_001019649.1Re-query CCDS DB by Nucleotide ID:NM_001024478Re-query CCDS DB by Protein ID:NP_001019649Link to BLAST:NP_001019649.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001019649.1 831 Q8BL00 831 100% 0 0

Chromosomal Locations for CCDS 36430.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 33034920 33035068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 33036547 33036595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 33038884 33038915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 33040390 33040403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 33042359 33042540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 33044999 33045243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 33046633 33046804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 33048938 33049164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 33050984 33051082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 33052110 33052212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 33053393 33053564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 33060232 33060421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 33061648 33061796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 33067208 33067312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 33068050 33068144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 33080322 33080419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 33082208 33082373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 33085991 33086193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 33092729 33092774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2496 nt):
ATGCAGGGGGCAGTCATTGTCCTTGTTCTCTTTGGGATCACCTCAGGAGGGGAAGCTCTACACCTGCTCC
ACCTGCCTGCCACTAGCAACGTGGCAGAGAACGCTCCACCTGCCACTTTGGTGCACAAGTTTTCTGTGAA
TTTATCAGTATCGTTGTCACCTGTGATCCCAGGGTTTCCCTTGGTAGTCAACCCAAGGCCCTTCACGGAG
GCCTTCAGGGTGAACAGACTGTCAGCAACCAACTTTGAGGTGGTCACCACCGGGAAAGAACAACTAGATT
TTGAAAGAGGACCGAAAGCATTCGATTTGCAGATTTACGTTAAGGATGATGTCGGTGTCACAGATGTGCA
AGTCCTGACTGTTCAGGTGACAGATGTGAACGAGCCTCCTCAGTTCCAAGGCATCCTGGCACAAGGTTTA
AACCTCTATGTCATAGAAAGAACAAACCCTGGATTCATTTACCAGGTGGAGGCATTTGACCCAGAAGACA
CAAGCCGGAGCATACCCCTCGGGTATTTCCTCATTTCTCCCTCGAAGAACTTCAGAATGTCTGCAAATGG
CACCCTCTTCTCTACCACAGAACTGGACTTTGAAGCAGGGCACAAGAGCTTCAACCTCCTTGTGGGAGTA
AGAGACAGTGGGAACCTCGAAGCCTCCACAGCTCTCCAGGTGACTATTGTGAACATCAATGATGAGACCC
CGCGCTTTACCAGCCCCAGGAGAGTGTACTCTGTCCCAGAAGAAGTGCCTCTAGGAACCATGGTGGCGAA
CATCACAGCAATGGATCCTGATGATGAGGGTTTTCCTGGCCGCCTCCTCTACAGCATCACTACCACCAGC
AGCTATTTCATGGTAGACCAGCTGACAGGGACAATCCAAGTGGCCCGAAGGCTAGATCGAGATGCAGGCG
AACTGAGACAGAATCCCATCATTTCTCTGGAAGTTCGAGTGAGAGACAGGCCCTCTGGGGGTCAGGAGAA
CCGCATGCAGATAACCTTCATTGTGGAAGACATCAATGACAACCCTGCAACATGCAGAAAGCTCACTTTC
AGCATTATGTTGCCTGAAAGAACAGCCAACGGGACGTTGCTTTTGGACCTGAACAAGTTCTGCTTTGATG
ATGACAGCGAAGCTCCAAACAACAAATTCAACTTTACCACGCCATCTGGAGCGGGGAGCAGCCGCAGATT
TTCACAGCATCCAGCTGGCTCTGGGAGAATTGTGTTGACTGGTGATCTAGACTATGAAAATCCAAGCAAC
CTTGCAGTTGGCAATGTGTACAATGTGATGATCCAAGTGCAGGATGCTGCTCCTCCATACTACAAAAAAA
GCATCTACATCTCTATCCTAACAAGGCCAGAAAATGAATTTCCTCTCATCTTTGAAAGGCCATCGTACGT
GTTTGATGTGCCAGAAAGAAGACCAGCTAGAACCCAGATTGGGCAGGTGCGAGCTACCGATGCAGACTTC
CCCCGGACTCCAGTGGTGTATTCCGTATCCAGAGGAGGGTCCAGCCTCCAGTACCCAAACATATTTTGGA
TTAACCCCAAGACAGGAGAACTCCAACTAATAACTCAAGCAGACCATGAAACCACTTCTGTCTACATTCT
CACCGTCGAGGCCACCAACGGCGAGGACAGGAGCTCAGTCACTGTTACTGTGAACATCCTTGGAGAAAAT
GATGAAAAGCCAGTATGTACTCCAAATTTTTACTTCATGGCCATCCCAGTGGATCTAAAAGTTGGCACAA
ACATTCAGAATTTCAAGCTGACGTGCACTGACCTTGATTCTAGCCCCAGTTCTTTTCGATACTCCATTGG
CTCAGGCAACATCAACAATCATTTCACCTTCTCTCCCAATGCCGGCTCCAACATCACGCGCCTGCTGCTG
GCTTCCCGCTTTGACTACAGCAGCCTCGATACCGTCTGGGACTACCAGCTGCTTGTCCACATTACTGATG
ACAACTTGCTGTCTGGCAGCACAAAAGCCAAGGCTCTTGTTGAAACAGGGACAGTGACTCTGAGTGTTAA
AGTCATTCCTCACCCAACCACAACCATCACAACTCCCAGGCCCAGGATTACCTACCAGATCCGCAGGGAA
AACGTGTACTCCACATCTGCATGGTATGTGCCGTTCATCGTCACTCTGGGATCCATACTTCTTCTTGGCC
TTCTGGGGTCCCTGATGGTGCTGCTGTCCAAAGCAGTCTACAGACATTGCTCCTCTACGACCAGGAGGGA
CAGGAAACCTCTGACAAAGAAAAGAGACACAAAAAGAATGAATAGAGAGGCCATGGTGGAATCTATCCAG
ATGAACTCTGTCTTTGATGGAGAAGCCGTAGATCCAGTGACCGGGGAAATATATGAATTCAACTCAAAAA
CTGGTGCCAGGAGGTGGAAAGGCCCATTAACCCAGCTGCCGAATTGGCCCGAGCCCAGTACCCAGCACAG
AGGCACAGCTGGAGAAGCACCAGTCCCTAAACACACAGGGAGATAA

Translation (831 aa):
MQGAVIVLVLFGITSGGEALHLLHLPATSNVAENAPPATLVHKFSVNLSVSLSPVIPGFPLVVNPRPFTE
AFRVNRLSATNFEVVTTGKEQLDFERGPKAFDLQIYVKDDVGVTDVQVLTVQVTDVNEPPQFQGILAQGL
NLYVIERTNPGFIYQVEAFDPEDTSRSIPLGYFLISPSKNFRMSANGTLFSTTELDFEAGHKSFNLLVGV
RDSGNLEASTALQVTIVNINDETPRFTSPRRVYSVPEEVPLGTMVANITAMDPDDEGFPGRLLYSITTTS
SYFMVDQLTGTIQVARRLDRDAGELRQNPIISLEVRVRDRPSGGQENRMQITFIVEDINDNPATCRKLTF
SIMLPERTANGTLLLDLNKFCFDDDSEAPNNKFNFTTPSGAGSSRRFSQHPAGSGRIVLTGDLDYENPSN
LAVGNVYNVMIQVQDAAPPYYKKSIYISILTRPENEFPLIFERPSYVFDVPERRPARTQIGQVRATDADF
PRTPVVYSVSRGGSSLQYPNIFWINPKTGELQLITQADHETTSVYILTVEATNGEDRSSVTVTVNILGEN
DEKPVCTPNFYFMAIPVDLKVGTNIQNFKLTCTDLDSSPSSFRYSIGSGNINNHFTFSPNAGSNITRLLL
ASRFDYSSLDTVWDYQLLVHITDDNLLSGSTKAKALVETGTVTLSVKVIPHPTTTITTPRPRITYQIRRE
NVYSTSAWYVPFIVTLGSILLLGLLGSLMVLLSKAVYRHCSSTTRRDRKPLTKKRDTKRMNREAMVESIQ
MNSVFDGEAVDPVTGEIYEFNSKTGARRWKGPLTQLPNWPEPSTQHRGTAGEAPVPKHTGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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