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Report for CCDS28944.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28944.1 Public Mus musculus 17 Washc1 23 108 98 CCDS HistoryNCBI Gene:68767Re-query CCDS DB by CCDS ID:28944.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28944.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072383.13 ENSMUSP00000072220.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072383.13Link to Ensembl Protein Viewer:ENSMUSP00000072220.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000072383Re-query CCDS DB by Protein ID:ENSMUSP00000072220
Original member Current member EBI ENSMUST00000116556.3 ENSMUSP00000112255.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116556.3Link to Ensembl Protein Viewer:ENSMUSP00000112255.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000116556Re-query CCDS DB by Protein ID:ENSMUSP00000112255
Original member Current member NCBI NM_001037757.1 NP_001032846.1 Accepted alive Link to Nucleotide Sequence:NM_001037757.1Link to Protein Sequence:NP_001032846.1Re-query CCDS DB by Nucleotide ID:NM_001037757Re-query CCDS DB by Protein ID:NP_001032846Link to BLAST:NP_001032846.1
Original member Current member NCBI NM_026833.1 NP_081109.1 Accepted alive Link to Nucleotide Sequence:NM_026833.1Link to Protein Sequence:NP_081109.1Re-query CCDS DB by Nucleotide ID:NM_026833Re-query CCDS DB by Protein ID:NP_081109Link to BLAST:NP_081109.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032846.1 475 Q8VDD8 475 100% 0 0
NP_081109.1 475 Q8VDD8 475 100% 0 0

Chromosomal Locations for CCDS 28944.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 66113868 66114016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66115671 66115782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66115954 66116100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66116260 66116396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66116629 66116761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66116973 66117174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66117264 66117443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66118063 66118221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66118811 66118879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66118997 66119136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGACACCGGTGAAGACCCAGTGCTCCTTGGCGGGCCAGCTTTATGCAGTGCCCCTCATCCAGCCCGACC
TGCGACGAGAGGAGGCAATCCAGCAAGTGGCAGATGCCCTGCAGTACCTACAGAACATCTCTGGAGACAT
CTTCAGCAGGATCTCCCGACGAGTAGAGCTGAGTCGGCGCCAGCTGCAGGCCATTAGTGAGAGGGTCTCC
TTGGCCCAGGCTAAGATAGAGAAGATCAAGGGCAGTAAGAAGGCCATCAAGGTCTTTTCTAGTGCCAAGT
ACCCAGCACCAGAGCACCTGCAGGAATACGGCTCCATCTTTACTGGCGCCTTGGACCCTGGTCTGCAGAG
AAGACCCCGTTACAGGATCCAGAGCAAGCACCGCCCACTGGATGAGCGGGCTCTGCAGGAGAAGCTGAAA
TACTTTCCCGTGTGTGTGAACACCAAGTCGGAGCCTGAGGATGAAGCTGAGGAGGGACTTGGGGGTCTTC
CCAGCAACATCAGCTCCATCAGCTCCCTGCTGCTCTTCAACACCACAGAGAATCTGTATAAGAAGTATGT
TTTCCTGGACCCTCTGGCTGGTGCAGTAACAAAAACGCACACGATGCTGGGCACAGAGGAGGAGAAATTG
TTCGATGCCCCTCTGTCTATCAGCAAGAGAGAGCAGCTGGAGCGGCAGGCTCCAGAAAACTACTTCTACG
TGCCAGACCTGGGCCAGGTTCCTGAGATCGACGTGCCATCCTACCTACCCGATTTACCCGGCGTCGCAGA
CGACCTGATGTACAGTGCGGATTTGGGCCCTGGCATTGCCCCGTCTGCTCCTGGTGCTATCCCAGAGTTG
CCTGCCTTCCACACAGAGGTGGCAGAACCTCTCCAGCCAGAGCTAGAGAATGAAGTACTGTTGGCAGCAC
CGCCCCCGCCTCCTCCCCCACCGCCGCCACCTCCCCCAGCTCCCACAGCATTGGTCAGTACCCCACAGCC
ACCGATGTTCCCTGACATGGCAACTGCTGCTGGCCAGGTTGCCAGGGAAGAAGACTCTAGCAGCAGCATG
GCCCACACAGCCTCTGTTCAGGGAGCCCCTAAGGAGGTGGTTGACCCCTCCAGTGGCCGGGCCACTCTGC
TCGAGTCCATCCGCCAAGCTGGGGGCATTGGCAAGGCCAAGCTACGCAGCGTGAAGGAGCGCAAACTGGA
GAAGAAGAAACAGAAGGAGCAGGAGCAAGTGAGAGCCACGAGCCAAGGTGGGGACTTGATGTCAGATCTC
TTCAACAAACTTGTCATGAGGCGCAAAGGTATCTCTGGAAAGGGACCTAGCACTGGAACCAGTGAGGGAC
CTGGAGGAGCCTTCTCTCGAATGTCAGACTCCATCCCACCGCTGCCACCCCCACAGCAGCCGGCAGGAGA
CGAGGATGAGGAGGACTGGGAGTCCTAA

Translation (475 aa):
MTPVKTQCSLAGQLYAVPLIQPDLRREEAIQQVADALQYLQNISGDIFSRISRRVELSRRQLQAISERVS
LAQAKIEKIKGSKKAIKVFSSAKYPAPEHLQEYGSIFTGALDPGLQRRPRYRIQSKHRPLDERALQEKLK
YFPVCVNTKSEPEDEAEEGLGGLPSNISSISSLLLFNTTENLYKKYVFLDPLAGAVTKTHTMLGTEEEKL
FDAPLSISKREQLERQAPENYFYVPDLGQVPEIDVPSYLPDLPGVADDLMYSADLGPGIAPSAPGAIPEL
PAFHTEVAEPLQPELENEVLLAAPPPPPPPPPPPPPAPTALVSTPQPPMFPDMATAAGQVAREEDSSSSM
AHTASVQGAPKEVVDPSSGRATLLESIRQAGGIGKAKLRSVKERKLEKKKQKEQEQVRATSQGGDLMSDL
FNKLVMRRKGISGKGPSTGTSEGPGGAFSRMSDSIPPLPPPQQPAGDEDEEDWES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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