NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39396.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39396.1 Public Mus musculus 5 Rasl11a 23 108 98 CCDS HistoryNCBI Gene:68895Re-query CCDS DB by CCDS ID:39396.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 39396.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031646.7 ENSMUSP00000031646.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031646.7Link to Ensembl Protein Viewer:ENSMUSP00000031646.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031646Re-query CCDS DB by Protein ID:ENSMUSP00000031646
Original member Current member NCBI NM_026864.1 NP_081140.1 Accepted alive Link to Nucleotide Sequence:NM_026864.1Link to Protein Sequence:NP_081140.1Re-query CCDS DB by Nucleotide ID:NM_026864Re-query CCDS DB by Protein ID:NP_081140Link to BLAST:NP_081140.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081140.1 242 Q6IMB1-1 242 100% 0 0

Chromosomal Locations for CCDS 39396.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 146845217 146845340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146845660 146845716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146845840 146845919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146847008 146847475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (729 nt):
ATGCGGCCGCTCACCATGTCTGGGCACTTTCTGCTGGCCCCCATCCCGGAGTCCTCCTCTGACTACCTCC
TGCCCAAGGACATCAAGCTGGCCGTGCTGGGAGCGGGTTGTGTGGGCAAGAGCGCAATGATTGTGCGCTT
CTTGACCAAGAGATTCATCGGCGACTACGAACCCAACACAGGCAAACTGTATTCGAGACTCGTCTATGTG
GAGGGGGACCAGCTATCCCTACAGATCCAGGACACTCCGGGAGGCATTCAGGCCCAAGACAGCCTCAGTC
AAATGGTGGATTCTCTGACCAAAAGTGTGCACTGGGCAGAGGGCTTTCTGCTGGTTTATTCCATAACAGA
CTATGAGAGCTACCAATCCATCCGGCCCCTTTACCAGCACATCCGGAAGGTCCACCCTGATGGAAAAGCC
CCCATCTTCATCGTGGGAAACAAAGGAGACCTTTTGCATGCCCGGCAGGTGCAGACACACGAAGGCCTTC
AGCTAGCTAATGAGCTGGGCAGTCTCTTCCTTGAAATTTCTACTAGTGAGAACTACGAAGACGTCTGTGA
TGTGTTCCAACATCTCTGCAAAGAAGTGATCAAGGTGCACAGACTCGGTGGGGAACGGAGGAGGGCATCC
GTCATTCCCCGGCCTCGATCCCCCAACATGCAGGACCTGAAGAGGCGCTTCAGGCAGGCCCTGTCCTCCA
AAGCGAAAGCGTCCTCCGCCCTGGGGTGA

Translation (242 aa):
MRPLTMSGHFLLAPIPESSSDYLLPKDIKLAVLGAGCVGKSAMIVRFLTKRFIGDYEPNTGKLYSRLVYV
EGDQLSLQIQDTPGGIQAQDSLSQMVDSLTKSVHWAEGFLLVYSITDYESYQSIRPLYQHIRKVHPDGKA
PIFIVGNKGDLLHARQVQTHEGLQLANELGSLFLEISTSENYEDVCDVFQHLCKEVIKVHRLGGERRRAS
VIPRPRSPNMQDLKRRFRQALSSKAKASSALG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH