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Report for CCDS4438.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4438.1 Public Homo sapiens 5 ZNF354A 24 110 108 CCDS HistoryNCBI Gene:6940Re-query CCDS DB by CCDS ID:4438.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4438.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335815.7 ENSP00000337122.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000335815.7Link to Ensembl Protein Viewer:ENSP00000337122.2Re-query CCDS DB by Nucleotide ID:ENST00000335815Re-query CCDS DB by Protein ID:ENSP00000337122
Original member Current member NCBI NM_005649.3 NP_005640.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005649.3Link to Protein Sequence:NP_005640.2Re-query CCDS DB by Nucleotide ID:NM_005649Re-query CCDS DB by Protein ID:NP_005640Link to BLAST:NP_005640.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005640.2 605 O60765 605 100% 0 0

Chromosomal Locations for CCDS 4438.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 178712060 178713621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178725376 178725471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178726999 178727125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178728990 178729022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1818 nt):
ATGGCTGCTGGGCAGCGGGAAGCGAGGCCCCAGGTGTCACTGACGTTTGAGGATGTGGCTGTGCTGTTTA
CCCGAGATGAGTGGAGAAAGCTGGCCCCTTCTCAGAGAAACTTGTACCGGGATGTGATGCTGGAGAACTA
TAGGAACCTGGTCTCACTGGGGCTCCCATTTACCAAACCAAAAGTGATCTCCCTGTTGCAGCAAGGAGAA
GATCCCTGGGAGGTGGAGAAAGACGGTTCTGGCGTCTCCTCTCTAGGATCGAAGAGCAGTCATAAAACCA
CAAAGTCAACGCAAACACAAGACTCTTCATTTCAGGGACTGATACTGAAAAGATCCAACAGGAATGTACC
TTGGGATTTGAAATTAGAAAAGCCTTACATATATGAAGGCAGATTAGAGAAAAAGCAGGATAAAAAGGGA
AGTTTTCAGATAGTTTCAGCCACCCACAAAAAAATCCCCACTATAGAAAGAAGCCATAAAAATACTGAAT
TGAGCCAAAACTTCAGCCCAAAGTCAGTGCTTATTAGGCAACAGATACTTCCCAGAGAAAAAACACCACC
AAAATGTGAAATACAAGGAAACAGCCTCAAACAGAATTCACAATTACTTAATCAACCAAAAATTACAGCA
GATAAACGCTATAAATGTAGTCTGTGTGAAAAAACCTTCATTAACACTTCATCCCTTCGTAAACATGAGA
AAAACCATAGTGGAGAGAAACTATTTAAGTGTAAAGAATGTTCAAAAGCCTTTAGCCAAAGTTCAGCTCT
TATTCAACATCAAATAACGCATACTGGAGAGAAACCCTACATATGTAAAGAATGTGGGAAAGCCTTTACT
CTCAGTACATCCCTTTATAAACATCTAAGAACCCATACTGTGGAGAAATCCTACAGATGTAAAGAATGTG
GTAAATCCTTCAGCCGAAGGTCAGGCCTTTTTATACATCAAAAAATTCATGCTGAAGAAAACCCTTGTAA
GTATAATCCGGGTAGGAAGGCATCTAGTTGCAGCACATCCCTTTCTGGATGTCAAAGAATTCATTCTAGA
AAGAAGTCCTACTTATGTAATGAATGTGGCAACACCTTTAAGTCTAGCTCATCCCTTCGTTATCATCAGA
GAATTCACACTGGAGAGAAGCCTTTTAAATGTAGTGAATGTGGGAGAGCCTTCAGCCAGAGTGCCTCTCT
TATTCAACATGAAAGAATTCACACCGGAGAAAAGCCCTATAGATGCAATGAATGTGGGAAAGGCTTTACT
TCTATTTCACGACTTAATAGACACCGAATCATTCATACTGGAGAGAAGTTTTATAATTGTAATGAATGTG
GTAAAGCCTTAAGCTCCCACTCAACACTTATTATTCACGAGCGAATTCATACTGGAGAAAAACCATGTAA
ATGTAAAGTATGTGGAAAAGCCTTCAGACAGAGTTCAGCTCTCATTCAACATCAGAGAATGCATACTGGA
GAAAGACCCTATAAATGTAACGAGTGTGGGAAAACATTCAGGTGTAACTCATCACTTAGTAATCACCAGA
GAATTCATACTGGAGAGAAACCATATCGATGTGAGGAATGTGGGATATCTTTTGGCCAAAGTTCAGCTCT
TATTCAGCATCGAAGGATTCATACAGGAGAAAAACCCTTTAAATGTAATACATGTGGAAAAACTTTTAGA
CAAAGCTCATCACGTATTGCACATCAGAGAATTCATACTGGAGAGAAACCCTATGAATGTAATACATGTG
GGAAACTTTTCAACCATAGGTCATCCCTTACTAATCATTATAAAATTCATATCGAAGAGGACCCCTAG

Translation (605 aa):
MAAGQREARPQVSLTFEDVAVLFTRDEWRKLAPSQRNLYRDVMLENYRNLVSLGLPFTKPKVISLLQQGE
DPWEVEKDGSGVSSLGSKSSHKTTKSTQTQDSSFQGLILKRSNRNVPWDLKLEKPYIYEGRLEKKQDKKG
SFQIVSATHKKIPTIERSHKNTELSQNFSPKSVLIRQQILPREKTPPKCEIQGNSLKQNSQLLNQPKITA
DKRYKCSLCEKTFINTSSLRKHEKNHSGEKLFKCKECSKAFSQSSALIQHQITHTGEKPYICKECGKAFT
LSTSLYKHLRTHTVEKSYRCKECGKSFSRRSGLFIHQKIHAEENPCKYNPGRKASSCSTSLSGCQRIHSR
KKSYLCNECGNTFKSSSSLRYHQRIHTGEKPFKCSECGRAFSQSASLIQHERIHTGEKPYRCNECGKGFT
SISRLNRHRIIHTGEKFYNCNECGKALSSHSTLIIHERIHTGEKPCKCKVCGKAFRQSSALIQHQRMHTG
ERPYKCNECGKTFRCNSSLSNHQRIHTGEKPYRCEECGISFGQSSALIQHRRIHTGEKPFKCNTCGKTFR
QSSSRIAHQRIHTGEKPYECNTCGKLFNHRSSLTNHYKIHIEEDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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