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Report for CCDS52226.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52226.1 Public Mus musculus 7 Klk12 23 108 98 CCDS HistoryNCBI Gene:69511Re-query CCDS DB by CCDS ID:52226.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52226.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000014063.5 ENSMUSP00000014063.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000014063.5Link to Ensembl Protein Viewer:ENSMUSP00000014063.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000014063Re-query CCDS DB by Protein ID:ENSMUSP00000014063
Original member Current member EBI ENSMUST00000107970.7 ENSMUSP00000103604.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107970.7Link to Ensembl Protein Viewer:ENSMUSP00000103604.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107970Re-query CCDS DB by Protein ID:ENSMUSP00000103604
Original member NCBI NM_027097.1 NP_081373.1 Updated not alive Link to Nucleotide Sequence:NM_027097.1Link to Protein Sequence:NP_081373.1Re-query CCDS DB by Nucleotide ID:NM_027097Re-query CCDS DB by Protein ID:NP_081373
Current member NCBI NM_027097.2 NP_081373.1 Accepted alive Link to Nucleotide Sequence:NM_027097.2Link to Protein Sequence:NP_081373.1Re-query CCDS DB by Nucleotide ID:NM_027097Re-query CCDS DB by Protein ID:NP_081373Link to BLAST:NP_081373.1

Chromosomal Locations for CCDS 52226.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 43769199 43769235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43769650 43769809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43770836 43771092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43771978 43772111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43773239 43773394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGAGGTTCAGCATTCTCTTGCTCCTGTGTGCTGTGGGTCTCAGTCAGGCAGACAGGGAGAAGATCTATA
ATGGTGTCGAGTGTGTGAAGAACTCACAGCCTTGGCAGGTGGGGCTGTTCCATGGCAAATACCTGCGCTG
TGGCGGTGTCCTTGTGGACCGCAAGTGGGTCCTTACGGCTGCTCACTGCCGTGACAAGTACGTGGTGCGC
CTTGGGGAACACAGCCTCACCAAGCTGGACTGGACAGAACAGTTGAGACACACCACCTTCTCCATAACAC
ACCCCAGCTACCAGGGCGCCTATCAGAACCATGAGCATGATCTTCGACTCCTGCGGCTGAACAGACCCAT
CCACCTGACCCGTGCTGTCCGGCCCGTGGCCCTGCCCAGTTCCTGTGTAACTACAGGGGCCATGTGTCAT
GTCTCAGGATGGGGTACTACAAACAAGCCATGGGACCCATTCCCAGACCGGCTCCAGTGCCTCAACCTCT
CCACTGTCTCCAATGAGACGTGCCGGGCTGTGTTTCCTGGAAGAGTGACGGAGAATATGTTGTGTGCAGG
TGGAGAAGCCGGGAAGGATGCCTGTCAGGGTGACTCTGGAGGCCCCCTGGTGTGTGGAGGGGTTCTTCAA
GGTCTGGTTTCCTGGGGATCTGTTGGGCCTTGTGGTCAAAAAGGTATTCCAGGAGTCTACACGAAGGTCT
GCAAATACACGGACTGGATCAGAATAGTCATCAGGAATAACTAA

Translation (247 aa):
MRFSILLLLCAVGLSQADREKIYNGVECVKNSQPWQVGLFHGKYLRCGGVLVDRKWVLTAAHCRDKYVVR
LGEHSLTKLDWTEQLRHTTFSITHPSYQGAYQNHEHDLRLLRLNRPIHLTRAVRPVALPSSCVTTGAMCH
VSGWGTTNKPWDPFPDRLQCLNLSTVSNETCRAVFPGRVTENMLCAGGEAGKDACQGDSGGPLVCGGVLQ
GLVSWGSVGPCGQKGIPGVYTKVCKYTDWIRIVIRNN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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