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Report for CCDS36175.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36175.1 Public Mus musculus 11 Fam83g 23 108 98 CCDS HistoryNCBI Gene:69640Re-query CCDS DB by CCDS ID:36175.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36175.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093019.5 ENSMUSP00000090697.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093019.5Link to Ensembl Protein Viewer:ENSMUSP00000090697.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000093019Re-query CCDS DB by Protein ID:ENSMUSP00000090697
Original member Current member NCBI NM_178618.3 NP_848733.2 Accepted alive Link to Nucleotide Sequence:NM_178618.3Link to Protein Sequence:NP_848733.2Re-query CCDS DB by Nucleotide ID:NM_178618Re-query CCDS DB by Protein ID:NP_848733Link to BLAST:NP_848733.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848733.2 812 Q5SWY7 812 100% 0 0

Chromosomal Locations for CCDS 36175.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 61684534 61685055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61695110 61695277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61701643 61701767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61702457 61703717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61707365 61707727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2439 nt):
ATGGCCTTCTCCCAGGTGCAGTGTCTGGACGACAACCACGTGAACTGGCGATCCAGCGAGTCGAAGCCCG
AGTTCTTCTACAGCGAGGAGCAGAGGCTGGCCCTGGAGGCCCTGGTGGCCCGGGGTCGCGACGCCTTCTA
CGAGGTGCTGAAGCGCGAGAACATCCGCGACTTTCTTTCGGAGCTGGAGCTTTCGCGTATCGTGGAGGCC
ATCGAGGTGTACGACCCGGGCTCTGAGGACCCGCGGGTCTCGGGCCGCCGCCCCGAACCCCAGGACAACG
GAGGCGCGGATGCCAGCGAGGAGACCAGTGCGGCGGGCGGGCCCCCAGCCACGGAGACGCTGCCCTCGCT
GGAGTATTGGCCCCAGAAGTCGGACCGCTCCATCCCGCAGCTGGACCTGGGCTGGCCTGACACCATTGCC
TACCGAGGTGTGACCCGGGCCAGCGTCTACATGCAGCCACCCATCGACGGGCAGCCGCACATCAAGGAAG
TGGTGCGCAAGATGGTCAGCCAGGCGCAGAAGGTGATAGCTGTGGTCATGGACATGTTCACTGACGTGGA
CATCTTCAAGGACCTGCTGGATGCTGGCTTCAAGAGGAAGGTGGCTGTGTACATCATTGTGGATGAGAGT
AATGTCAAGTATTTCCTGCACATGTGTGAGCGGGCCCGCATGCACCTGGGGCACCTCAAGAATCTCAGGG
TACGCAGCAGCGGGGGAACCGAGTTCTTCACACGATCAGCCACCAAGTTCAAGGGTGTCCTGGCCCAGAA
GTTCATGTTTGTGGATGGAGATCGGGCCGTGTGTGGCTCCTACAGCTTCACATGGTCAGCTGCAAGGACC
GATCGGAATGTGATCTCTGTGCTGTCTGGTCAGGTAGTAGAGATGTTTGATCGACAGTTCCAGGAGCTGT
ACCTTATGTCTCAGAGTGTCAGCCTCAAGGACATCCCCATGGAGAAGGAGCCAGAGCCAGAGCCCATTGT
GCTACCATCTGTGGTACCCCTGGTACCCACAGGCACCATGGCCAAGAAGCTTGTCAACCCCAAGTATGCA
CTTGTCAAGGCCAAGAGTGTGGATGAGATTGCCAAGAGTTCCTCTGACAAACAGGAGGTTACGAGACCCC
CTGGGCTGCGGGGCCCTGCAGTGGCTGAGCGCCCCGGGGATCTTTCTGAGCTGCTACCACCTGTCCACCC
AGGGCTGCTCAACCTGGAGAGGGCCAATATGTTTGAGTACTTGCCCACATGGGTGGAGCCAGATCCAGAG
CCTGGCAGTGACATCCTGGGCTACATCAACATCATTGATCCCAACATCTGGAACCCCCAGCCCAACCAGA
TGAACCGCATCAAGATCCGTGACACAGCCCATGCCAGTGCCCAGCACCAGCTGTGGAAGCAGAGCCAGGG
GGCCCGACCCTGCCCAGCACCCTGCCCTCCCCCAGCACCCAGGGACTCCCAGGGTGTGGTCCCAGCTGAG
AATGGCTTCCCCCAGGGGAACCCTGAACCACAGGCTCCTGTACCTAAGCCCCGGACAGTCCCTGTGGCAA
GTGTACTTGCCCGGGATGGTAGTGATATTGGCTGGGCCCTGGATACCCCAGAAAAGGAGACACCCCAAAA
TGGGATAGACCCCAGGCTACCAAGCACAGCCAGCGAAAGCGAGGTCCCACAACAGCAGCACTCATCTATG
ACGCAGGATGACCCTGATGGCCTGGAGAGAGGACTCCCCAATGGGCTGGATGAGGATGAGGATGACGACG
ATGACTACGTGACCCTCAGTGACCAGGACAGCCTCTCAGGCAGTTCTGGCCCTGGCCCTGGCCACCGGCG
ACCCTCAGTGGCTTCATCCATGTCAGACGAGTACTTTGAGGTGAGGGAACGATCAGTACCTCTCCAGAGG
CGCCACTCAGAGCAGATGGCCAATGGGCCAGGCCACCCACCCCGACGACAGCTCAGTGCCCCTCATGTAA
CCAGAGGAACCTTTGGTGGCCCCCTGAGTAGCCCCCTGTGGGCCCAGGGTCGGAGCAGAGAAGATGTAGA
TGCATCAAGGATACAGGGACAACGCCCCATGGACAGGCAGGCTCAGGGCCAGCATTTCCACCGACATGGA
AGTACTACCTCAAGGACCCCAGGGCCTCCCCGTTTCCGGCCTGCTGCTGATGGTACCCAGAGCTCTTCCA
AGAAAGCAAGCCCAGCCGCAGCAGGCCCCCACCACTGGCAGCCCAAGGGGAGCCCAACACCCAGAATGCT
ACCAGATCCTGGGAGCCCAAGGCCAACCCGAAACACTCGCCTCCGAGCAGAGCTCAGGGCCACTGAGGAA
CATGCCAGTCCCTTCGGAATCCCATACTCCAAATTGTCTCAATCGAAGCACCTAAAGGCCAGGGCAGGTG
GCAGCCAGTGGGCCCCTTCGGACTCTAAGCGCAGGGCCCGAGACCACAAGGAACCCTAG

Translation (812 aa):
MAFSQVQCLDDNHVNWRSSESKPEFFYSEEQRLALEALVARGRDAFYEVLKRENIRDFLSELELSRIVEA
IEVYDPGSEDPRVSGRRPEPQDNGGADASEETSAAGGPPATETLPSLEYWPQKSDRSIPQLDLGWPDTIA
YRGVTRASVYMQPPIDGQPHIKEVVRKMVSQAQKVIAVVMDMFTDVDIFKDLLDAGFKRKVAVYIIVDES
NVKYFLHMCERARMHLGHLKNLRVRSSGGTEFFTRSATKFKGVLAQKFMFVDGDRAVCGSYSFTWSAART
DRNVISVLSGQVVEMFDRQFQELYLMSQSVSLKDIPMEKEPEPEPIVLPSVVPLVPTGTMAKKLVNPKYA
LVKAKSVDEIAKSSSDKQEVTRPPGLRGPAVAERPGDLSELLPPVHPGLLNLERANMFEYLPTWVEPDPE
PGSDILGYINIIDPNIWNPQPNQMNRIKIRDTAHASAQHQLWKQSQGARPCPAPCPPPAPRDSQGVVPAE
NGFPQGNPEPQAPVPKPRTVPVASVLARDGSDIGWALDTPEKETPQNGIDPRLPSTASESEVPQQQHSSM
TQDDPDGLERGLPNGLDEDEDDDDDYVTLSDQDSLSGSSGPGPGHRRPSVASSMSDEYFEVRERSVPLQR
RHSEQMANGPGHPPRRQLSAPHVTRGTFGGPLSSPLWAQGRSREDVDASRIQGQRPMDRQAQGQHFHRHG
STTSRTPGPPRFRPAADGTQSSSKKASPAAAGPHHWQPKGSPTPRMLPDPGSPRPTRNTRLRAELRATEE
HASPFGIPYSKLSQSKHLKARAGGSQWAPSDSKRRARDHKEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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