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Report for CCDS14866.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14866.1 Public Mus musculus 1 Ccdc115 23 108 98 CCDS HistoryNCBI Gene:69668Re-query CCDS DB by CCDS ID:14866.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14866.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042493.9 ENSMUSP00000042918.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042493.9Link to Ensembl Protein Viewer:ENSMUSP00000042918.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000042493Re-query CCDS DB by Protein ID:ENSMUSP00000042918
Original member Current member NCBI NM_027159.2 NP_081435.1 Accepted alive Link to Nucleotide Sequence:NM_027159.2Link to Protein Sequence:NP_081435.1Re-query CCDS DB by Nucleotide ID:NM_027159Re-query CCDS DB by Protein ID:NP_081435Link to BLAST:NP_081435.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081435.1 180 Q8VE99 180 100% 0 0

Chromosomal Locations for CCDS 14866.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 34437498 34437610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34437727 34437858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34438850 34438932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34439043 34439146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34439228 34439338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (543 nt):
ATGGCGGTCCAGGCTCTGCGAGAGGAGTTGGACTCCAAGTGCCTACAGCTGCTCAGTGACCTGGAGGAAC
TGGAGGCGAAGCGGGCGGCGCTGAACGCCAGGGTGGAGGAGGGTTGGCTCTCACTTGCCAAGGCTCGCTA
TGCCATGGGAGCCAAGTCGGTAGGACCCCTGCAGTATGCCTCGCGTATGGAGCCTCAGGTCTGCGTGCGT
GCCAGCGAGGCCCAGGATGGACCCCAGACCTTCAGGGTGATCAAAGCTGACGCCCAGACCCCCGAGGAAG
TGGGGCCTAGCGAAGCATCTCTGCGCAGGCGCAAGGGCCCCACCAAGACCAAAGAGTTAGGATCTGCTGT
AGTTCCTCAAGATCCCTTGAACTGGTTTGGAATTTTGGTTCCTCACAGTCTGCGGCAGGCCCAAGCCAGC
TTCCGGGATGGCCTACAGCTGGCTGCAGATATAGCCAGTCTCCAGACTCGCATCAACTGGGGTCAGAGTC
AGCTTCGAGGCCTCCAGAAAAAACTGAAGGAGTTGGACCCTGGGCCTGCCTGA

Translation (180 aa):
MAVQALREELDSKCLQLLSDLEELEAKRAALNARVEEGWLSLAKARYAMGAKSVGPLQYASRMEPQVCVR
ASEAQDGPQTFRVIKADAQTPEEVGPSEASLRRRKGPTKTKELGSAVVPQDPLNWFGILVPHSLRQAQAS
FRDGLQLAADIASLQTRINWGQSQLRGLQKKLKELDPGPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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