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Report for CCDS39890.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39890.1 Public Mus musculus 7 Tmem147 23 108 98 CCDS HistoryNCBI Gene:69804Re-query CCDS DB by CCDS ID:39890.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39890.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006478.9 ENSMUSP00000006478.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006478.9Link to Ensembl Protein Viewer:ENSMUSP00000006478.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000006478Re-query CCDS DB by Protein ID:ENSMUSP00000006478
Original member Current member NCBI NM_027215.2 NP_081491.2 Accepted alive Link to Nucleotide Sequence:NM_027215.2Link to Protein Sequence:NP_081491.2Re-query CCDS DB by Nucleotide ID:NM_027215Re-query CCDS DB by Protein ID:NP_081491Link to BLAST:NP_081491.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081491.2 224 Q9CQG6-1 224 100% 0 0

Chromosomal Locations for CCDS 39890.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 30727780 30727903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30727987 30728108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30728205 30728289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30728432 30728568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30728657 30728716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30729202 30729271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30729344 30729420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (675 nt):
ATGACCCTGTTCCACTTCGGGAACTGCTTCGCCCTCGCCTACTTTCCCTATTTCATCACGTACAAATGCA
GCGGCCTGTCTGAATACAACGCCTTCTGGAAATGCGTCCAGGCCGGGGTCACCTACCTCTTTGTGCAGCT
ATGCAAGATGTTGTTCTTGGCCACTTTCTTCCCCACCTGGGAAGGTGGCATCTATGACTTCATTGGGGAA
TTCATGAAGGCCAGTGTGGATGTGGCAGACCTGATAGGCCTAAACCTTGTCATGTCTCGGAATGCAGGCA
AGGGGGAGTACAAGATTATGGTTGCTGCCCTGGGCTGGGCCACTGCTGAACTCATTATGTCCCGATGCAT
CCCCCTCTGGGTGGGAGCCCGAGGCATTGAATTTGACTGGAAATATATCCAGATGAGCATTGACTCCAAC
ATCAGTCTGGTCCACTACATCGTTGCATCAGCTCAGGTCTGGATGATAACACGCTATGACCTGTACCACA
CCTTCCGGCCTGCTGTTCTCCTCCTGATGTTCCTTAGTGTCTACAAGGCCTTTGTCATGGAGACCTTCGT
CCACCTCTTCTCCTTGGGTAGTTGGACAGCACTGCTCGCCCGGGCAGTAGTAACAGGACTGCTGGCCCTC
AGCACCTTGGCCCTGTATGTTGCTGTTGTCAATGTACACTCCTAG

Translation (224 aa):
MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWKCVQAGVTYLFVQLCKMLFLATFFPTWEGGIYDFIGE
FMKASVDVADLIGLNLVMSRNAGKGEYKIMVAALGWATAELIMSRCIPLWVGARGIEFDWKYIQMSIDSN
ISLVHYIVASAQVWMITRYDLYHTFRPAVLLLMFLSVYKAFVMETFVHLFSLGSWTALLARAVVTGLLAL
STLALYVAVVNVHS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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