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Report for CCDS19777.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19777.1 Public Mus musculus 5 Ppp1r35 23 108 98 CCDS HistoryNCBI Gene:69871Re-query CCDS DB by CCDS ID:19777.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19777.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031739.5 ENSMUSP00000031739.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031739.5Link to Ensembl Protein Viewer:ENSMUSP00000031739.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000031739Re-query CCDS DB by Protein ID:ENSMUSP00000031739
Original member Current member NCBI NM_027242.5 NP_081518.1 Accepted alive Link to Nucleotide Sequence:NM_027242.5Link to Protein Sequence:NP_081518.1Re-query CCDS DB by Nucleotide ID:NM_027242Re-query CCDS DB by Protein ID:NP_081518Link to BLAST:NP_081518.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081518.1 260 Q9D8C8 260 100% 0 0

Chromosomal Locations for CCDS 19777.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 137778994 137779221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137779302 137779545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137779626 137779762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137779854 137780027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (783 nt):
ATGATGGGCTTCGGGGCGTCTGCGTTAGAGTCCATTGAAGGCGAAGAGGCCCTGGAGGTCCCGGGGCCAC
CCCCGGAGCCGCGAGCCCCGGAACCCCGAGCCCCAGAGCCCGAGCCGGGCTTGGACTTGAGCCTTAGCCC
GAGCCCGCTGCCCGAAAGTCCGAAGGCGCGGAAGAGCAGCCCGGGTCAGCGGAAGGGGCGGCGGGGCGGT
AGCCGGAGGGGGCGGCAGGTTCGTTTTCAACTGGCGCCGCCCTCCCCGGTGCGGTCCGAGCCGCTGCTGG
TGGCCGGTGCACCGGGCGACGATCATGAGCTGGAGGCACCGGCCCTGCAGAGCAGCCTGGCTTTGAGTCT
GGAGCTGCAGAACGCGCGCGCCGCTGTCGCCAGCGGCCAGTTTGATGCCTCCAAGGCGGTAGAGGAGCAG
CTGAGAAAGTCGTTCCGGACCCGCTGTGCCCTGGAGGAGACCGTGGCGGAGGGGTTGAACGTGCCGCGCT
CTAAGCGACTCTACCGAGACCTGGTGAGTCTGCAGGTGCCCGAGGAGCAGGTACTGAACGCGGCGCTGAG
GGAGAAGCTGGCGATGCTGCCACCGCAGCCCCGAGCCCCGCCCCTGAAGGAGGTGCTCGGGCCGGGCCCA
GACATGACCATGCTGTGCAACCCAGATTCTCTGTGGTCCGAATCTCCGCACTTGACAGTGGATGGGCTGC
CCCCACTAAGGCTTCAAGCCCGGCCCCGCCCTTCAGAAGATACCTTTCTCATGCATCGGATGCTGAGGCG
CTGGGAAGCGTAG

Translation (260 aa):
MMGFGASALESIEGEEALEVPGPPPEPRAPEPRAPEPEPGLDLSLSPSPLPESPKARKSSPGQRKGRRGG
SRRGRQVRFQLAPPSPVRSEPLLVAGAPGDDHELEAPALQSSLALSLELQNARAAVASGQFDASKAVEEQ
LRKSFRTRCALEETVAEGLNVPRSKRLYRDLVSLQVPEEQVLNAALREKLAMLPPQPRAPPLKEVLGPGP
DMTMLCNPDSLWSESPHLTVDGLPPLRLQARPRPSEDTFLMHRMLRRWEA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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