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Report for CCDS29562.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29562.1 Public Mus musculus 19 Tut1 23 108 98 CCDS HistoryNCBI Gene:70044Re-query CCDS DB by CCDS ID:29562.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29562.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096239.6 ENSMUSP00000093958.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096239.6Link to Ensembl Protein Viewer:ENSMUSP00000093958.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000096239Re-query CCDS DB by Protein ID:ENSMUSP00000093958
Original member NCBI NM_197993.3 NP_932110.1 Updated not alive Link to Nucleotide Sequence:NM_197993.3Link to Protein Sequence:NP_932110.1Re-query CCDS DB by Nucleotide ID:NM_197993Re-query CCDS DB by Protein ID:NP_932110
Current member NCBI NM_197993.4 NP_932110.1 Accepted alive Link to Nucleotide Sequence:NM_197993.4Link to Protein Sequence:NP_932110.1Re-query CCDS DB by Nucleotide ID:NM_197993Re-query CCDS DB by Protein ID:NP_932110Link to BLAST:NP_932110.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_932110.1 869 Q8R3F9-1 869 100% 0 0

Chromosomal Locations for CCDS 29562.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 8953940 8954021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8955387 8955577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8959087 8959402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8959743 8959843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8962344 8962822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8964020 8964129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8964264 8964374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8964561 8964653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8965034 8966160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2610 nt):
ATGGCGGCGGTGGATTCGGACGTTGTATCGCTGCCGCGTGGCCGCTTTCGCTGCTGCCTCTGCGATGTTA
CTACAGCCAACCGACCCAGCCTCGATGCCCACTTGAAAGGCCGGAAGCACCGGGATTTGGTGCAACTCCG
AGCTACCAGGAAGGCACAGGGACTCCGAAGTGTGTTTGTCAGTGGCTTCCCCAGGGATGTGGGTTCTGCT
CAGCTCTCTGAGTACTTCCAGACATTTGGCCCTGTGGCCAATATTGTCATGGACAAGGACAAGGGGGTGT
TTGCCATCGTGGAGATGGGAGACATAAGTGCTCGGGAGGCTGTCTTATCACAGCCCAAGCACAGCCTTGG
GGGACATGGACTTCGAGTCCGGCCAAGGGAGCAGAAGGAGTTCCAGAGCCCAGCTTCCAAGTCTCCCAAA
GGAGTGGACTCAAGTAGTCACCAGCTGGTCCAAGCACTGGCTGAGGCTGCGGATGTGGGGGCCCAGATGG
TGAAGCTTGTGGAACTGAGGGAGTTGTCTGAGGCTGAGCGGCAGCTTCGGAACCTTGTTGTGGCCCTGAT
GCAGGAGGTCTTCACAGAGTTCTTCCCTGGCTGTGTGGTCCATCCTTTTGGCTCTACTGTAAATAGCTTT
GATGTTCATGGCTGTGATCTCGACCTCTTCTTGGACATGGGTGATATGGAAGAGACCGAGCCAGACCCAA
AGGCTCCAAAGGTTCCAGAGACTTCATCCTTGGACTCAGCCCTTGCTTCTTCCCTGGATCCTCAGGCGCT
GGCCTGCACCCCAGCTTCTCCTCTAGACTCACTGTCTCCAACTTCTGTTCAAGAGTCTGAGTCCCTGGAC
TTTGACACCCCATCTTCTCTGGCACCACAGACACCCGACTCTGCTTTGGGCTCTGACACTGTCACCTCTC
CTCAGTCTCTGCCTCCAGTTTCACCACTGCAGGAGGACAGGAAAGAGGGGAAACAGGGGAAAGAGCTAGA
ATTAGCAGAAGAAGCCTCAAAGGACGAGAAGGAGGAGGCAGCAGCAGTGTTAGAGCTGGTGGGATCTATT
CTCCGTGGCTGTGTCCCTGGAGTGTACCGAGTCCAAACTGTGCCCTCTGCCCGGCGTCCTGTGGTCAAGT
TCTGTCATCGGCCTTCAGGTCTTCATGGAGATGTATCCCTCAGTAACCGGTTGGCCTTATATAATTCACG
TTTCCTGAATCTCTGCTCTGAGATGGATGGTCGAGTCCGGCCCCTTGTGTATACCTTACGCTGCTGGGCT
CAGCATAATGGGCTGTCAGGAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACT
TCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAGGTGAAGGGGA
ACAGGTAGAAGTTGATGGCTGGGACTGTAGCTTCCCTAAGGATGCCTCAAGATTGGAGCCCAGCACCAAC
GTGGAGCCTCTCAGTTCCCTGCTGGCCCAGTTCTTCTCCTGCGTATCTTGCTTGGATCTTTCTGGCTCCC
TGCTGTCCCTGCGGGAAGGTCGGCCATTGATGGTGGCAGAGGGCCTGCCTTCTGATCTCTGGGAAGGGCT
GCGCCTTGGCCCCATGAATCTCCAGGACCCCTTTGACCTGAGTCACAATGTTGCAGCCAATGTGACCGGC
CGGGTGGCTAAACGTCTGCAGAGCTGTTGTGGGGCAGCAGCCAGTTACTGCCGAAGTCTCCAGTACCAGC
AGCGTTCCTCCCGGGGCCGGGACTGGGGACTGCTCCCGCTTTTGCAGCCCAGCTCCCCTAGCTCCCTGCT
GTCTGCCAAGCTCATCCCCTTACCCTCTGCCCCCTTTCCACAGGTCATTATGGCTTTGGTGGATGTGTTA
AGGGAAGCACTAGGATGCCACATAGAACAGGGAACCAAGAGACGACGGTCAGAAGGTGCCAGAATTAAAG
ACTCTCCCTTGGGAGGGGTGAACAAAAGACAGAGACTTGGTGGGCAAGAAAAGAGCTTCGAGGAAGGGAA
AGAGGAGCCACAGGGATGTGCAGGGGACCACAGTGAAAATGAGGTAGAAGAAATGGTAATAGAGGTTCGA
GAGACACCTCAGGACTGGGCCTTGTTGCACTCGGGACCACCAGAGGAGGAGTTGCCCCTGATGACTGCAA
ACTGTCTAGACAAGGCAGCTGAGCATAATCCCATGAAACCTGAAGTGGCTGGAGAAGGGTCTCAGGGTGA
GACAGGGAAGGAGGCATCACACCCATCATCAGTGAGCTGGCGCTGTGCCTTGTGGCACCAAGTATGGCAG
GGGAGGCGGCGTGCCCGGAGACGATTACAGCAACAAACCAAGGAAGAAGGTAGAGGAGGTCCCACCACAG
GAGCAGAGTGGCTGGCAATGGAAGCTCGTGTGACCCAGGAACTAAAAGGACCCAATAGTGAGCAAGAGAG
GCCGCCGGGGGAGCCCCTCCTCAGCTTTGTGGCATCTGCCTCCCAGGCTGAGCAGACACTCACTGTGGCC
CCACTCCAGGACTCCCAAGGCCTGTTCCCTGGTCTTCATCATTTTCTACAGGGTTTTATCCCTCAAGCAC
TTAAAAATCTCCTCAAGTGA

Translation (869 aa):
MAAVDSDVVSLPRGRFRCCLCDVTTANRPSLDAHLKGRKHRDLVQLRATRKAQGLRSVFVSGFPRDVGSA
QLSEYFQTFGPVANIVMDKDKGVFAIVEMGDISAREAVLSQPKHSLGGHGLRVRPREQKEFQSPASKSPK
GVDSSSHQLVQALAEAADVGAQMVKLVELRELSEAERQLRNLVVALMQEVFTEFFPGCVVHPFGSTVNSF
DVHGCDLDLFLDMGDMEETEPDPKAPKVPETSSLDSALASSLDPQALACTPASPLDSLSPTSVQESESLD
FDTPSSLAPQTPDSALGSDTVTSPQSLPPVSPLQEDRKEGKQGKELELAEEASKDEKEEAAAVLELVGSI
LRGCVPGVYRVQTVPSARRPVVKFCHRPSGLHGDVSLSNRLALYNSRFLNLCSEMDGRVRPLVYTLRCWA
QHNGLSGGGPLLNNYALTLLVIYFLQTRDPPVLPTVAQLTQRAGEGEQVEVDGWDCSFPKDASRLEPSTN
VEPLSSLLAQFFSCVSCLDLSGSLLSLREGRPLMVAEGLPSDLWEGLRLGPMNLQDPFDLSHNVAANVTG
RVAKRLQSCCGAAASYCRSLQYQQRSSRGRDWGLLPLLQPSSPSSLLSAKLIPLPSAPFPQVIMALVDVL
REALGCHIEQGTKRRRSEGARIKDSPLGGVNKRQRLGGQEKSFEEGKEEPQGCAGDHSENEVEEMVIEVR
ETPQDWALLHSGPPEEELPLMTANCLDKAAEHNPMKPEVAGEGSQGETGKEASHPSSVSWRCALWHQVWQ
GRRRARRRLQQQTKEEGRGGPTTGAEWLAMEARVTQELKGPNSEQERPPGEPLLSFVASASQAEQTLTVA
PLQDSQGLFPGLHHFLQGFIPQALKNLLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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