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Report for CCDS48413.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48413.1 Public Mus musculus 1 Cenpl 23 108 98 CCDS HistoryNCBI Gene:70454Re-query CCDS DB by CCDS ID:48413.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48413.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111618.7 ENSMUSP00000107245.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111618.7Link to Ensembl Protein Viewer:ENSMUSP00000107245.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111618Re-query CCDS DB by Protein ID:ENSMUSP00000107245
Original member Current member EBI ENSMUST00000111620.9 ENSMUSP00000107247.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111620.9Link to Ensembl Protein Viewer:ENSMUSP00000107247.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000111620Re-query CCDS DB by Protein ID:ENSMUSP00000107247
Original member Current member NCBI NM_001159930.2 NP_001153402.1 Accepted alive Link to Nucleotide Sequence:NM_001159930.2Link to Protein Sequence:NP_001153402.1Re-query CCDS DB by Nucleotide ID:NM_001159930Re-query CCDS DB by Protein ID:NP_001153402Link to BLAST:NP_001153402.1

Chromosomal Locations for CCDS 48413.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 161074760 161074930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161078229 161078480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161082908 161083450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161085988 161086059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1038 nt):
ATGGATTCCTGTGATTTTCGAGGACTGACTTCTAGACGAAGGACCTCAAATCTTAAGAACTACTTTGTAG
GTGCCACCCCTCTGCAGAAACGACTGGAATTGGTCAGGAGGCAGAATTCAGATTTTCCCAGTCCATCTCG
AAGGAAAATTCCCCAGTGTTCACAGTTGCAGGAAGATATCGATCCTCAGAAGGTTGCATTTCTCCTCCAC
AAACAGTGGACTATATATAGTTTAACTCCCTTGTATAAATTCTCCTATTCTAATCTCAAAGACTATTCTA
GACTTCTAAGTGCATTTATTGTTGCCGAAAAGCAAAAAGGAGTAGCTGTGGAAGTGGGAGAAGACTTCAA
CATCAAAGTGATTTTCTCCACTCTACTTGGAGTGAAAGGGACACAAAGGGACCATGAAGCGTTTCTTGTC
CAGATTCTCTCAAAATCTCAGTCATCACGTGAACACAGAGAAGATAAAGTGTTGTGGACTGGTTGGTTCT
GTTGTGTGTTTGGAGAGAGTCTTCAGGAGACTGTCTCAGAAGACTTCACCTGTCTACCCTTATTCCTTGC
AAATGGAGCGGAGTCCAATACATCTTTAATCAGAGACTGGTTTCAGAAAACCTTTGACTGTTGCTTCAGT
CCTTTAGCAATCAGTGCGTTTAATCTTTCCTGGATGGCTGCTATGTGGACAGCATGCAAAATGGACCGTT
ATATGGCTACTACTGAATTTCTTTGGTCTGTGCCCTGTAGCCCACAGAGCTTAGATATTTCTTATGCAAT
ACATCCAGAAGATGCAAAAGCTTTATGGGAAAGTGTCCACAAAACCCCTGGGGAGGTTACCCAGGAGGAA
GTTGACTTATTTATGAACTGCCTTTATTCACATTTCCATAGGCATTTCAAAATTCACTTAGCAGCCACAA
GATTGGTTCGTGTCTCAACATCTGTAGCTTCAGCACACACTGATGGGAAAATAAAGATTCTGTGTCATAA
ATACCTTATTGGTGTGTTGGCATATATGACAGAACTGGCAATTTTTCAAATTGAATGA

Translation (345 aa):
MDSCDFRGLTSRRRTSNLKNYFVGATPLQKRLELVRRQNSDFPSPSRRKIPQCSQLQEDIDPQKVAFLLH
KQWTIYSLTPLYKFSYSNLKDYSRLLSAFIVAEKQKGVAVEVGEDFNIKVIFSTLLGVKGTQRDHEAFLV
QILSKSQSSREHREDKVLWTGWFCCVFGESLQETVSEDFTCLPLFLANGAESNTSLIRDWFQKTFDCCFS
PLAISAFNLSWMAAMWTACKMDRYMATTEFLWSVPCSPQSLDISYAIHPEDAKALWESVHKTPGEVTQEE
VDLFMNCLYSHFHRHFKIHLAATRLVRVSTSVASAHTDGKIKILCHKYLIGVLAYMTELAIFQIE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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