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Report for CCDS20132.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20132.1 Public Mus musculus 6 Spmip4 23 108 98 CCDS HistoryNCBI Gene:70821Re-query CCDS DB by CCDS ID:20132.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20132.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031852.4 ENSMUSP00000031852.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031852.4Link to Ensembl Protein Viewer:ENSMUSP00000031852.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000031852Re-query CCDS DB by Protein ID:ENSMUSP00000031852
Original member NCBI NM_027564.3 NP_081840.1 Updated not alive Link to Nucleotide Sequence:NM_027564.3Link to Protein Sequence:NP_081840.1Re-query CCDS DB by Nucleotide ID:NM_027564Re-query CCDS DB by Protein ID:NP_081840
Current member NCBI NM_027564.4 NP_081840.1 Accepted alive Link to Nucleotide Sequence:NM_027564.4Link to Protein Sequence:NP_081840.1Re-query CCDS DB by Nucleotide ID:NM_027564Re-query CCDS DB by Protein ID:NP_081840Link to BLAST:NP_081840.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081840.1 588 Q9D5Y0 588 100% 0 0

Chromosomal Locations for CCDS 20132.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 50573701 50574516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50577421 50577512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50577791 50577965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50583930 50584018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50584343 50584524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50587178 50587207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50589111 50589182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50591637 50591813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50595798 50595931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1767 nt):
ATGGAGGTAATTCACGGCAGGCCCCACTGCTGCAGGAACCTTGAAGGAGCTGACATTCTGTCAAACACCT
TTTACTCTAACGGACTGCACACCCCGTACGAAACAACTATTCGGCCAACTGCTTCACAAGCCAGGTATCA
GGAGCTGAGGGAGGCTCTGCCACAATGCAGACTTCGGTGGGGTGCCGATAGAGAATATGGTGGTGTGCTT
CCAGTTTCCCTTCCCGAAGAACACAGGCCGAAATGTGAGCCTCCCCGTCTCATGAGCAAAGGACACCAGC
ATTACGGATTTGGCGGGGAGATCTGGCCAAAAAAGCTCCCCATTGAGCAGTATTACTATATGACACAGAA
CAAGAAGAGCGACGTGTATGGAAACGACTCTTTGCTACCCAAACCACCTAATTCAGCAGTAAAAGAAATC
TGCTCACCGTATCCAATTGAACATCCCTACCATACACACATAAGCCGTGGCTCCGTGTTTCCGACCTTTA
CATCGCCTAAGGACCTTTACACCGGCATTAAAGCTCGTACCCAGCAGCCTTTTCCTCCTACGGTGCCAAC
CAAGGCCTGTGACACAACCATTCTGAAGACAAGAGGTAACCCTTACAGATATGAACTGCTCGATTTTCCC
ATGGATTCAAAGAAAAAAGCATTGACTTGGCCAGGTCAGGGTGTATATTATGATTTTCCTAAATTTGTTG
AGAAAAACAAGCCAGTATTCTACCCCAAACCTCCTAAAACCTTTGCTCCTAACTCCTCTGTGAATCCATG
GGATACAATGAGCTCTGCAAAGGACGCTAATATACAGAGAAATCTTGAGAGGTCTCACTGGCTCACTTCA
TATGCTCACGATTTTACAGGTCTAGGTCCTATGAGCCCCCTTGAACTGGATGATTACCATGAAAAGGAGC
TAGCAGAGCTAACTGGACAGATAGGATTTGACCCACAGCCTCAAGAAAAATTCCATCCTGCCTTAAAAAC
TCCTAGACCTTTGGATGGTCGAATTGCCCGACTTACTCAGAACCAACGACCTCTGGAGGCTACAGTGCAA
ATACCACCTCCCTGTCCAGACTGTACCCCTAGAGTTTTGTGTGCTTTTCATACATTCATACCCACTTCTG
CAGAAATTATGGCAATGAATAATAACCTCCTGTCTGGAATAACCCATAAAAACCAGGATGTTGAAGAGAA
GATTAAGGAAGAACAAGGCTTGATGTCTACCTGTCCACTCCCAACTTGTTATGAATCAAAAGACTTGACT
AGTCTCTATGACGTACAATCATTTCCAAAGATCACAGACACTAAAAAGACAGATGATTTGTACTGGAGAC
AGCTGGAGATGAAGCCCCTCCCCATATCCTGCTCTAAGTCAAACCATTACATTGACTATGAACCACTTAA
GTCTGCCTACCGTGACCCATATGCTATGTGTCCAAACCCTGTTCGCCTCAGTAAGTCTAATATTCTTCAA
AACAAAACAGATACGGCTGATTTCACTTTTGACAACTTTTTAAGTAAACCAGAATTTTTGGGCATGAACA
TGGAAAGCAATGAAGAAACAAGACCTCTTTTAGATTGGATCCCTAGAGCTGGAGTGCCCAAGCATCATTC
CAACCTGCGAAATCTTAGGAACACATTCTCAAAGTCCATGGCACAGAAGCGTCTGCATAACTCCATTCAA
GAAGAACAAAAAGACCTCCGAGATAAACTGCAGTGTGGGATGAGACATCAATTTTTTGGCTACAATGGCC
ATCATTTCTATAATTGA

Translation (588 aa):
MEVIHGRPHCCRNLEGADILSNTFYSNGLHTPYETTIRPTASQARYQELREALPQCRLRWGADREYGGVL
PVSLPEEHRPKCEPPRLMSKGHQHYGFGGEIWPKKLPIEQYYYMTQNKKSDVYGNDSLLPKPPNSAVKEI
CSPYPIEHPYHTHISRGSVFPTFTSPKDLYTGIKARTQQPFPPTVPTKACDTTILKTRGNPYRYELLDFP
MDSKKKALTWPGQGVYYDFPKFVEKNKPVFYPKPPKTFAPNSSVNPWDTMSSAKDANIQRNLERSHWLTS
YAHDFTGLGPMSPLELDDYHEKELAELTGQIGFDPQPQEKFHPALKTPRPLDGRIARLTQNQRPLEATVQ
IPPPCPDCTPRVLCAFHTFIPTSAEIMAMNNNLLSGITHKNQDVEEKIKEEQGLMSTCPLPTCYESKDLT
SLYDVQSFPKITDTKKTDDLYWRQLEMKPLPISCSKSNHYIDYEPLKSAYRDPYAMCPNPVRLSKSNILQ
NKTDTADFTFDNFLSKPEFLGMNMESNEETRPLLDWIPRAGVPKHHSNLRNLRNTFSKSMAQKRLHNSIQ
EEQKDLRDKLQCGMRHQFFGYNGHHFYN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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