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Report for CCDS57296.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57296.1 Public Mus musculus 4 Pou3f1 23 108 98 CCDS HistoryNCBI Gene:18991Re-query CCDS DB by CCDS ID:57296.1Re-query CCDS DB by GeneID:18991See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57296.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053491.8 ENSMUSP00000137374.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053491.8Link to Ensembl Protein Viewer:ENSMUSP00000137374.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000053491Re-query CCDS DB by Protein ID:ENSMUSP00000137374
Original member Current member NCBI NM_011141.2 NP_035271.1 Accepted alive Link to Nucleotide Sequence:NM_011141.2Link to Protein Sequence:NP_035271.1Re-query CCDS DB by Nucleotide ID:NM_011141Re-query CCDS DB by Protein ID:NP_035271Link to BLAST:NP_035271.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035271.1 449 P21952 449 100% 0 0

Chromosomal Locations for CCDS 57296.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 124657707 124659056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1350 nt):
ATGGCCACCACCGCGCAGTATCTGCCGCGGGGCCCCGGCGGCGGAGCTGGGGGCACAGGGCCGCTCATGC
ATCCCGATGCCGCCGCGGCGGCGGCAGCGGCGGCCGAGCGGCTGCACGCGGGGGCCGCGTACCGCGAAGT
GCAGAAGCTGATGCACCACGAGTGGCTGGGCGCGGGCGCGGGCCACCCCGTGGGCCTAGCGCACCCTCAA
TGGCTACCCACGGGAGGAGGCGGCGGCGGCGACTGGGCGGGCGGCCCGCACCTGGAACACGGCAAGGCAG
GCGGTGGCGGTACCGGCCGAGCTGACGACGGCGGCGGTGGCGGCGGTTTCCACGCCCGCCTGGTGCACCA
AGGGGCGGCCCACGCGGGCGCGGCATGGGCACAAGGCGGCACAGCGCACCACTTGGGCCCCGCCATGTCG
CCGTCGCCCGGGGCCGGCGGGGGTCACCAGCCCCAGCCGCTCGGGCTGTACGCTCAGGCGGCCTACCCCG
GTGGCGGCGGCGGCGGCCTGGCCGGGATGCTGGCGGCGGGAGGCGGCGGCGCGGGACCCGGCCTGCACCA
CGCACTGCACGAGGACGGCCACGAGGCACAGCTGGAGCCGTCGCCACCACCGCACCTGGGCGCACACGGA
CACGCACACGGACATGCACACGCGGGCGGCCTGCACGCGGCGGCGGCGCACCTGCACCCGGGCGCGGGCG
GTGGTGGCTCGTCGGTGGGCGAGCACTCGGACGAGGATGCTCCCAGCTCCGACGACCTGGAGCAGTTCGC
CAAGCAGTTCAAGCAACGACGCATCAAGCTGGGCTTCACCCAGGCCGACGTGGGACTGGCGCTGGGCACC
CTCTACGGTAACGTGTTCTCGCAGACCACCATCTGCCGTTTCGAGGCCCTGCAGCTGAGCTTCAAGAACA
TGTGCAAGCTCAAGCCGCTGCTCAACAAGTGGCTGGAGGAGACCGACTCGTCCAGCGGCAGCCCCACCAA
CCTGGACAAGATCGCGGCGCAGGGCCGCAAGCGCAAGAAGCGCACGTCCATCGAGGTGGGTGTCAAAGGC
GCGCTCGAGAGCCACTTTCTCAAGTGTCCCAAGCCGTCTGCGCACGAGATCACCGGCCTGGCCGACAGCC
TGCAACTGGAGAAGGAGGTGGTGCGTGTCTGGTTCTGCAACCGGCGGCAGAAGGAGAAGCGCATGACCCC
CGCGGCCGGCGCGGGCCACCCGCCCATGGACGACGTTTATGCGCCTGGGGAGCTGGGGCCTGGCGGGGGC
AGCGCGTCGCCACCTTCTGCGCCCCCGCCACCCCCGCCGGCCGCGCTGCACCACCACCACCACCACACAC
TGCCCGGCTCTGTGCAGTGA

Translation (449 aa):
MATTAQYLPRGPGGGAGGTGPLMHPDAAAAAAAAAERLHAGAAYREVQKLMHHEWLGAGAGHPVGLAHPQ
WLPTGGGGGGDWAGGPHLEHGKAGGGGTGRADDGGGGGGFHARLVHQGAAHAGAAWAQGGTAHHLGPAMS
PSPGAGGGHQPQPLGLYAQAAYPGGGGGGLAGMLAAGGGGAGPGLHHALHEDGHEAQLEPSPPPHLGAHG
HAHGHAHAGGLHAAAAHLHPGAGGGGSSVGEHSDEDAPSSDDLEQFAKQFKQRRIKLGFTQADVGLALGT
LYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEETDSSSGSPTNLDKIAAQGRKRKKRTSIEVGVKG
ALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPAAGAGHPPMDDVYAPGELGPGGG
SASPPSAPPPPPPAALHHHHHHTLPGSVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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