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Report for CCDS11227.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11227.1 Public Homo sapiens 17 TNFAIP1 24 110 108 CCDS HistoryNCBI Gene:7126Re-query CCDS DB by CCDS ID:11227.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11227.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000226225.7 ENSP00000226225.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000226225.7Link to Ensembl Protein Viewer:ENSP00000226225.2Re-query CCDS DB by Nucleotide ID:ENST00000226225Re-query CCDS DB by Protein ID:ENSP00000226225
Original member Current member NCBI NM_021137.5 NP_066960.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021137.5Link to Protein Sequence:NP_066960.1Re-query CCDS DB by Nucleotide ID:NM_021137Re-query CCDS DB by Protein ID:NP_066960Link to BLAST:NP_066960.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_066960.1 316 Q13829-1 316 100% 0 0

Chromosomal Locations for CCDS 11227.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 28339522 28339726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28340309 28340478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28341237 28341326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28341404 28341456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28342247 28342442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28344364 28344600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGTCGGGGGACACCTGCCTGTGCCCAGCCTCAGGGGCCAAGCCCAAGCTCAGTGGCTTCAAGGGAGGAG
GGTTGGGCAACAAGTATGTCCAGCTCAACGTGGGCGGCTCTCTGTACTACACCACTGTGCGGGCCCTGAC
CCGCCACGACACCATGCTCAAGGCCATGTTCAGTGGGCGCATGGAGGTGCTGACCGACAAAGAAGGCTGG
ATCCTCATAGACCGTTGTGGAAAGCACTTTGGCACCATTTTGAATTACCTCCGAGATGACACCATCACCC
TCCCTCAGAACCGGCAAGAAATCAAGGAATTGATGGCTGAAGCAAAGTATTACCTCATCCAGGGGCTGGT
GAATATGTGCCAGAGTGCCCTGCAGGACAAGAAGGACTCCTACCAGCCTGTGTGCAACATCCCCATCATC
ACATCCCTAAAGGAGGAGGAGCGGCTCATCGAATCCTCCACCAAGCCCGTGGTGAAGCTGCTGTACAACA
GAAGCAACAACAAGTATTCCTACACCAGCAACTCTGACGACCACCTGCTGAAAAACATCGAGCTGTTTGA
CAAGCTCTCCCTGCGCTTCAACGGCCGCGTGCTCTTCATCAAGGATGTCATTGGTGACGAGATCTGCTGC
TGGTCCTTTTATGGCCAGGGCCGTAAGCTGGCAGAGGTGTGCTGTACCTCCATCGTGTATGCCACGGAGA
AGAAGCAGACCAAGGTGGAATTCCCAGAGGCCCGAATCTATGAGGAGACACTCAACGTCCTACTCTATGA
GACTCCCCGCGTCCCCGACAACTCCTTGTTGGAGGCCACAAGCCGTAGCCGCAGCCAGGCTTCCCCCAGT
GAAGATGAGGAGACCTTTGAACTGCGGGACCGTGTCCGCCGCATCCACGTCAAGCGCTACAGCACTTACG
ATGACCGGCAGCTCGGCCACCAGTCTACCCATCGCGACTGA

Translation (316 aa):
MSGDTCLCPASGAKPKLSGFKGGGLGNKYVQLNVGGSLYYTTVRALTRHDTMLKAMFSGRMEVLTDKEGW
ILIDRCGKHFGTILNYLRDDTITLPQNRQEIKELMAEAKYYLIQGLVNMCQSALQDKKDSYQPVCNIPII
TSLKEEERLIESSTKPVVKLLYNRSNNKYSYTSNSDDHLLKNIELFDKLSLRFNGRVLFIKDVIGDEICC
WSFYGQGRKLAEVCCTSIVYATEKKQTKVEFPEARIYEETLNVLLYETPRVPDNSLLEATSRSRSQASPS
EDEETFELRDRVRRIHVKRYSTYDDRQLGHQSTHRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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