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Report for CCDS21776.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21776.2 Reviewed, update pending Mus musculus 7 Vps35l 23 108 98 CCDS HistoryNCBI Gene:71517Re-query CCDS DB by CCDS ID:21776.2See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 21776.2
The coding region has been updated to extend the N-terminus. The use of an alternative upstream would result in a protein that is 28 aa longer.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 21776.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059390.12 ENSMUSP00000051263.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059390.12Link to Ensembl Protein Viewer:ENSMUSP00000051263.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000059390Re-query CCDS DB by Protein ID:ENSMUSP00000051263
Original member NCBI NM_027815.4 NP_082091.3 Updated not alive Link to Nucleotide Sequence:NM_027815.4Link to Protein Sequence:NP_082091.3Re-query CCDS DB by Nucleotide ID:NM_027815Re-query CCDS DB by Protein ID:NP_082091
Current member NCBI NM_027815.5 NP_082091.4 Pending alive Link to Nucleotide Sequence:NM_027815.5Link to Protein Sequence:NP_082091.4Re-query CCDS DB by Nucleotide ID:NM_027815Re-query CCDS DB by Protein ID:NP_082091Link to BLAST:NP_082091.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082091.4 963 Q8BWQ6-1 963 100% 0 0

Chromosomal Locations for CCDS 21776.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 118740675 118740775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118743595 118743694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118746375 118746542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118748126 118748248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118749667 118749691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118752817 118752893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118753806 118753934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118760161 118760245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118766365 118766424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118773021 118773117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118774000 118774047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118775292 118775385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118779688 118779765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118780177 118780299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118790010 118790056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118791368 118791479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118792562 118792678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118794542 118794595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118796966 118797046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118800438 118800500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118801261 118801346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118804104 118804184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118806991 118807054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118809878 118809976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118811805 118811882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118813530 118813644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118826184 118826323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118833702 118833867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118838113 118838231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118840555 118840701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118841196 118841294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2976 nt):
ATGGCGTCTGGGGCGGGGCCGAGCTTCCCTGGATGTGAGAAAAGGGGCTGGACGCGGAAAACAGGCGATC
ATGTGACTGGGAAGATGGCTGTCTTTCCCTGGCATTCCCGGAACAGGAACTACAAGGCGGAGCTGGCGTC
TTGCAGGTTGGAGACAGTGCCTCTGGAGTGCGGCGACTACCACCCGCTGAAGCCCATCACTGTCACGGAG
TCAAAGACAAAGAAAGTGAGCCGGAAAGGAAGCACGTCTTCTACCTCCTCCTCCTCTTCCAGCTCCGTGA
TCGATCCTCTGAGCAGCGTCCTCGATGGCACCGACCCGCTCTCCATGTTTGCAGCCACCTCGGACCCGGC
AGCCACAGGAACAGTCACAGACAGCTCCAGAAAGAAACGTGATAAGGATGAGAACTCCTTCGTGGGACCT
GATTTCGAGCCCTGGGCCAACAAACGTGTGGAAATCCTTGCCCGGTACACAACTACAGAGAAGCTGTCTA
TTAATCTGTTTATGGGATCAGAAAAAGGCAGAGGTGGGGCTGCGGCTTCTGCCATGTCAGAGAAGGTTCG
GACGCGGCTGGAAGAGCTGGATGACTTTGAGGAGGGATCCCAGAAGGAGCTGCTGAACCTGACCCAGCAG
GATTATGTGAACCGCATAGAGGAGCTCAACCAGTCTCTGAAGGATGCCTGGGCCTCGGACCAGAAGGTGA
AGGCTCTGAAGATCGTCATCCAGTGTTCAAAGCTGCTGTCAGACACGAGTGTTATTCAGTTCTACCCAAG
CAAGTTTGTCCTCATCACCGACATCCTTGATACGTTTGGAAAGCTGGTCTATGAGCGCATCTCCTCGATG
TGTGTGGACAGCCGCAGTGCCTTGCCAGATCATTTCTCCCCAGAGAACGTGAACGACACAGCCAAGGAGA
CATGCCTGAATTGGTTTTTCAAGATCGCTTCCATCCGGGAACTCATTCCAAGATTTTATGTGGAAGCATC
CATCCTGAAGTGTAACAAGTTCCTCTCCAAAACGGGGATTTCAGAGTGCCTGCCCCGACTAACCTGCATG
ATCAGAGGGATCGGAGACCCACTCGTGTCCGTGTACGCCCGGGCCTACCTGTGTCGGGTGGGGATCGAAG
TGGCCCCGCACCTCAAGGAGAGCCTCAATAAGAACTTCTTTGACTTCCTGCTGACATTTAAACAGATTCA
TGGGGACACTGTCCAGAACCAGCTGGTGGCCCAGGGTGTGGAGCTGCTGTCCTATCTCCCTCTGTACTCG
CCTGCCATGGGCTGGATCTTCCAGTGTGTCTCCTACCACGCTCCAGAGGCTTTGCTGACGGAGATGATGG
AAAGATGTAAGAAACTAGGGAACAATGCTTTGCTGTTGAACTCCGTGATGTCAGCTTTCAGGGCTGAGTT
CGTTGCCACCAGGTCTATGGACTTCATCGGCATGATCAAAGAGTGTGACGAGTCCGGCTTCCCCAAGCAT
CTCCTTTTTCGTTCATTGGGGTTAAACTTGGCTTTGGCTGATCCTCCTGAGAACGATCGACTTCAGATTC
TCAATGAAGCTTGGAAAGTCATCACTAAACTGAAGAGTCCTCAGGACTACATTAATTGTGCCGAGGTTTG
GGTAGAGTACACCTGCAGGCATTTCACGAAACGAGAAGTTAACACTGTTCTGGCTGACGTCATCAAGCAC
ATGACTCCGGATCGAGCATTTGAGGACTCTTACCCCCAGCTCCAGTCAATCATTCAGAAAGTCATCGCCC
ACTTCCACGATTTCTCAGTTCTTTTCTCAGTGGAAAAGTTTCTACCATTTCTGGACATGTTCCAGAAAGA
GAGTGTGCGGGTGGAGGTTTGCAAGTGCATCATGGAAGCCTTTATCAAGCACCAGCAGGAGCCAACCAAG
GACCCTGTCATCCTCAATGCCCTTTTGCACATTTGCAAGACAATGCACGACTCCGTGAACGCTCTCACTC
TTGAGGATGAGAAAAGGACGCTGGCCCACTTGATCAATGGATTTATAAAAATGGTGTCCTTTGGCCGTGA
TTTTGAACAGCAGCTCAGCTTTTACGTCGAGTCCAGGTCTATGTTTTGCAACCTGGAACCTGTTCTTGTG
CAGTTGATCCATAGTGTGAACCGGTTGGCAATGGAAACAAGGAAAGTCATGAAGGGAAACCACTCCAGAA
AGACAGCTGCGTTTGTCCGGGCCTGTGTTGCCTACTGCTTCATCACCATCCCGTCCCTGGTAGGGATCTT
CACCCGCCTCAACCTCTACCTGCATTCCGGTCAGGTTGCCTTGGCCAACCAGTGCCTCTCCCAAGCTGAT
GCTTTCTTCAAAGCCGCCATCGGCCTCGTTCCCGAAGTCCCAAAGACGATAAGCATCGATGGGAAGCTGC
GGCCGTCGGAGCCCTTCCTACTGGAATTCCTGTGCAATTTCTTCTCTACCTTATTGATTGTGCCGGATCA
TCCAGAGCACGGAGTCCTATTTCTGGTTCGAGAACTTCTCAACGTGATCCAGGACTACACCTGGGAGGAC
AGTAGTGATGACAAAATTCGAATCTACACCTCTGTCCTGCACCTGCTGTCTGCCATGAGCCAGGACACCT
ATCTTTACCACATAGACAAAGTTGACTCCAATGACAGCTTGTACGGGGGAGACTCCAAGTTCCTGGCTGA
GAACAGCAAGCTGTGTGAGGCTGTGATGGCTCAGATCCTGGAGCACCTGAAAACCCTGGCCAAAGACGAG
GCTCTGAAGCGACAGAGCCTGCTGGGCCTCTCCTTCTTCAATAGCATCCTAGCCCACGGGGACCTTCGTA
ACAACAAGCTGAACCAACTCTCTGTCAACCTATGGCACCTGGCACAGAGACACGGCTGTGCAGACACAAG
GACTATGGTGAAAACTCTGGATTACATCAAGAAGCGAAGCAAACAACCTGACATGAATCATCTGTCAGAG
CTGGCCCTGAGGCTCCCTCTGCAAACCAGGACCTGA

Translation (991 aa):
MASGAGPSFPGCEKRGWTRKTGDHVTGKMAVFPWHSRNRNYKAELASCRLETVPLECGDYHPLKPITVTE
SKTKKVSRKGSTSSTSSSSSSSVIDPLSSVLDGTDPLSMFAATSDPAATGTVTDSSRKKRDKDENSFVGP
DFEPWANKRVEILARYTTTEKLSINLFMGSEKGRGGAAASAMSEKVRTRLEELDDFEEGSQKELLNLTQQ
DYVNRIEELNQSLKDAWASDQKVKALKIVIQCSKLLSDTSVIQFYPSKFVLITDILDTFGKLVYERISSM
CVDSRSALPDHFSPENVNDTAKETCLNWFFKIASIRELIPRFYVEASILKCNKFLSKTGISECLPRLTCM
IRGIGDPLVSVYARAYLCRVGIEVAPHLKESLNKNFFDFLLTFKQIHGDTVQNQLVAQGVELLSYLPLYS
PAMGWIFQCVSYHAPEALLTEMMERCKKLGNNALLLNSVMSAFRAEFVATRSMDFIGMIKECDESGFPKH
LLFRSLGLNLALADPPENDRLQILNEAWKVITKLKSPQDYINCAEVWVEYTCRHFTKREVNTVLADVIKH
MTPDRAFEDSYPQLQSIIQKVIAHFHDFSVLFSVEKFLPFLDMFQKESVRVEVCKCIMEAFIKHQQEPTK
DPVILNALLHICKTMHDSVNALTLEDEKRTLAHLINGFIKMVSFGRDFEQQLSFYVESRSMFCNLEPVLV
QLIHSVNRLAMETRKVMKGNHSRKTAAFVRACVAYCFITIPSLVGIFTRLNLYLHSGQVALANQCLSQAD
AFFKAAIGLVPEVPKTISIDGKLRPSEPFLLEFLCNFFSTLLIVPDHPEHGVLFLVRELLNVIQDYTWED
SSDDKIRIYTSVLHLLSAMSQDTYLYHIDKVDSNDSLYGGDSKFLAENSKLCEAVMAQILEHLKTLAKDE
ALKRQSLLGLSFFNSILAHGDLRNNKLNQLSVNLWHLAQRHGCADTRTMVKTLDYIKKRSKQPDMNHLSE
LALRLPLQTRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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