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Report for CCDS52880.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52880.1 Public Mus musculus 9 Zfp949 23 108 98 CCDS HistoryNCBI Gene:71640Re-query CCDS DB by CCDS ID:52880.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52880.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000161458.2 ENSMUSP00000125017.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161458.2Link to Ensembl Protein Viewer:ENSMUSP00000125017.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161458Re-query CCDS DB by Protein ID:ENSMUSP00000125017
Original member Current member EBI ENSMUST00000162827.7 ENSMUSP00000125325.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162827.7Link to Ensembl Protein Viewer:ENSMUSP00000125325.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162827Re-query CCDS DB by Protein ID:ENSMUSP00000125325
Original member Current member NCBI NM_001142943.1 NP_001136415.1 Accepted alive Link to Nucleotide Sequence:NM_001142943.1Link to Protein Sequence:NP_001136415.1Re-query CCDS DB by Nucleotide ID:NM_001142943Re-query CCDS DB by Protein ID:NP_001136415Link to BLAST:NP_001136415.1
Original member Current member NCBI NM_001163061.1 NP_001156533.1 Accepted alive Link to Nucleotide Sequence:NM_001163061.1Link to Protein Sequence:NP_001156533.1Re-query CCDS DB by Nucleotide ID:NM_001163061Re-query CCDS DB by Protein ID:NP_001156533Link to BLAST:NP_001156533.1

Chromosomal Locations for CCDS 52880.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 88554530 88554544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 88567159 88567285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 88567508 88567600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 88568614 88570190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1812 nt):
ATGAATGAATATGTGGAGTTGGTGTCTTTTGAGGACGTCACTGTGAAGTTCACCTGGGAGGAGTGGCAGA
ATCTCAACGACGCTCAGAAGATGCTGTACAGGAGTGTGATGCTGGAGACATATAATAGCCTGCTGTCACT
GGGGCAATGCATCCCTAAACCTGAGTTGATCTTTAAATTGGAACAGGGAGAGGAGCCATGGACAGCAGAA
GAACCTGCAAACAAGACTCTGCCAGTATTCTGCAGTGTGGATGGCATAATTGAGACCAACCAGAAGAGTC
GAGAGAGACATTTGTGGCAAGTTACTGCCAGTGGCCACAATAGAGAAACTGAGCAAGCACGTGGACCAGA
AGACACTTTTTATTTATACTCCATGAATATTTCAAATTTTGTTGTAAATAATAGAAACTGTTCAGGAGTG
AAGCCTGAGGAGTTGAATGGATACCTGAATAGATGTCACCCTTTGGAGACTCATGAATTGTGTATTGTAG
AGCGATATAATGACTGTTGTGTAGCAGGGAAATCTGTCAGATGCCCTGAGCAGTTGGGTCAGTGTTCTAA
GATTGAAACTGGACAGCAGGATTTCGAATATATCAGAGAAAGGAAAGATACAAAGGAGGGAAAACTATTG
AAAAAAATTACTCCATCTAAGAGACTTCAAGTGGGACTGACTTCTTGTAAGCATAGTGAGTGTGAGCCAC
TTTCTGTTCAGTCAGATGTCATGGCTAATGTAGGGAAGGCAACTTTTAGTAAGAAGTATAACCTCACTAA
ACACCAAGCAACAAACTCAGGGAGAAAATCTTGTAAATGCCTTGAAAGTAAGAAAACCTTTCCCAGTGAA
TTAGACATTATAGAACATCAGAGGACACATAACCAGAAAAAAGACCATGTATGTATCCAGTGTGAGAAAC
CCTTTAGCACTAAATCTTCCCTTACTATTCATCAGAGAATTCACACAGGAGAAAAGCCCTATGGATGCAG
TGAATGTAATAAAACCTTCAGACAAAAGTCAGCTCTCATTGTACATGAGAGGACTCACACTGGAGTGAAA
CCCTTCGAATGTTGTGAGTGTGGTAAAGCCTTCCAACATAAGTGGTATCTCAAAACGCACCAGAGAACTC
ATACTGGGGAGAAACCGTATGCGTGTATAGAATGTGGAAAAGCCTTTCTAAAGAAGTCATACCTCAAAAT
GCATCAGGGAACTCACAAGAGTGATAAACCATATGAATGTGAGAAATGTGGAAAAACCTTCCATAACAGG
TCATACTTCAACATGCATCACAGAACTCACACGGGTGAGAAGCCCTATGCATGCAGTGAGTGTGGAAAAG
CCTTTTACCAAAAGTCAGACCTCAGGAGGCATCAGAGGATACATAACAGTGAGAAATTACATGAATGTAA
AGAATGTGGAAAAGCCTTTCAAAATAAGTCATACCTCAAAACTCACCAGAAAGTTCACACAGGTGAGAAA
CCATATGAGTGTAAAGAGTGTGGGAAAGCCTTTCAAAACAAGTCATATCTCAACAAGCATCAGATAATTC
ACACAGGTGAAAAGCCCTATGAGTGCAATAAATGTGGGAAAACGTTTCAGTGGAAGTTAGTCCTCAGCAA
GCATCACAGAACCCACACAGGTGAAAAGCCCTATGAATGCATTCAGTGTGGAAAAATGTTTGGCTACAAG
TCGTCCCTCATTGTACATGAGTTGATTCATTCTGGGGAGAAACCTTATGAATGTAATGTTTGTAGAAAAA
CCTTTTCACAGAAGTCAAACCTAAGCCGGCATCAGAGAACTCACCGACATGGGGAGCTATGA

Translation (603 aa):
MNEYVELVSFEDVTVKFTWEEWQNLNDAQKMLYRSVMLETYNSLLSLGQCIPKPELIFKLEQGEEPWTAE
EPANKTLPVFCSVDGIIETNQKSRERHLWQVTASGHNRETEQARGPEDTFYLYSMNISNFVVNNRNCSGV
KPEELNGYLNRCHPLETHELCIVERYNDCCVAGKSVRCPEQLGQCSKIETGQQDFEYIRERKDTKEGKLL
KKITPSKRLQVGLTSCKHSECEPLSVQSDVMANVGKATFSKKYNLTKHQATNSGRKSCKCLESKKTFPSE
LDIIEHQRTHNQKKDHVCIQCEKPFSTKSSLTIHQRIHTGEKPYGCSECNKTFRQKSALIVHERTHTGVK
PFECCECGKAFQHKWYLKTHQRTHTGEKPYACIECGKAFLKKSYLKMHQGTHKSDKPYECEKCGKTFHNR
SYFNMHHRTHTGEKPYACSECGKAFYQKSDLRRHQRIHNSEKLHECKECGKAFQNKSYLKTHQKVHTGEK
PYECKECGKAFQNKSYLNKHQIIHTGEKPYECNKCGKTFQWKLVLSKHHRTHTGEKPYECIQCGKMFGYK
SSLIVHELIHSGEKPYECNVCRKTFSQKSNLSRHQRTHRHGEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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