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Report for CCDS24301.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24301.1 Public Mus musculus 10 Tmt1b 23 108 98 CCDS HistoryNCBI Gene:71664Re-query CCDS DB by CCDS ID:24301.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24301.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026398.4 ENSMUSP00000026398.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026398.4Link to Ensembl Protein Viewer:ENSMUSP00000026398.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000026398Re-query CCDS DB by Protein ID:ENSMUSP00000026398
Original member Current member NCBI NM_027853.2 NP_082129.2 Accepted alive Link to Nucleotide Sequence:NM_027853.2Link to Protein Sequence:NP_082129.2Re-query CCDS DB by Nucleotide ID:NM_027853Re-query CCDS DB by Protein ID:NP_082129Link to BLAST:NP_082129.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082129.2 244 Q9DD20 244 100% 0 0

Chromosomal Locations for CCDS 24301.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 128958719 128958955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128960441 128960938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (735 nt):
ATGGATGCCCTGGTTCTATTTCTGCAGCTGCTGGTGCTGCTCCTGACTCTACCTCTACACCTACTGGCTC
TGCTGGGCTGCTGGCAGCCTATATGCAAAACCTACTTCCCTTACTTCATGGCCATGCTAACAGCCAGGTC
CTACAAAAAGATGGAAAGCAAGAAACGGGAACTATTTAGCCAGATAAAAGATCTCAAGGGGACTTCCGGC
AACGTGGCCCTGCTGGAGCTGGGCTGCGGCACCGGTGCCAACTTCCAGTTCTACCCACAGGGCTGCAAGG
TCACCTGTGTGGACCCAAACCCCAACTTCGAGAAGTTCCTGACAAAGAGCATGGCTGAGAACAGGCACCT
CCAATATGAGCGCTTCATTGTGGCTTACGGAGAGAACATGAAACAACTGGCTGACAGCTCCATGGATGTG
GTGGTCTGTACCCTGGTGCTATGTTCTGTGCAGAGCCCCAGAAAGGTCCTGCAGGAAGTCCAGAGAGTCC
TGAGGCCGGGAGGCCTACTGTTCTTCTGGGAGCACGTGGCTGAGCCTCAGGGAAGCCGGGCCTTCCTGTG
GCAGCGAGTTTTAGAGCCTACCTGGAAACACATCGGAGATGGTTGCCACCTCACCAGAGAGACCTGGAAA
GACATTGAGAGGGCACAGTTCTCCGAAGTCCAGCTGGAATGGCAGCCCCCTCCCTTCAGGTGGTTACCTG
TTGGGCCCCACATCATGGGAAAAGCTGTGAAATAA

Translation (244 aa):
MDALVLFLQLLVLLLTLPLHLLALLGCWQPICKTYFPYFMAMLTARSYKKMESKKRELFSQIKDLKGTSG
NVALLELGCGTGANFQFYPQGCKVTCVDPNPNFEKFLTKSMAENRHLQYERFIVAYGENMKQLADSSMDV
VVCTLVLCSVQSPRKVLQEVQRVLRPGGLLFFWEHVAEPQGSRAFLWQRVLEPTWKHIGDGCHLTRETWK
DIERAQFSEVQLEWQPPPFRWLPVGPHIMGKAVK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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