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Report for CCDS48575.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48575.1 Public Mus musculus 10 Tysnd1 23 108 98 CCDS HistoryNCBI Gene:71767Re-query CCDS DB by CCDS ID:48575.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48575.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020284.4 ENSMUSP00000020284.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020284.4Link to Ensembl Protein Viewer:ENSMUSP00000020284.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000020284Re-query CCDS DB by Protein ID:ENSMUSP00000020284
Original member Current member NCBI NM_027912.1 NP_082188.1 Accepted alive Link to Nucleotide Sequence:NM_027912.1Link to Protein Sequence:NP_082188.1Re-query CCDS DB by Nucleotide ID:NM_027912Re-query CCDS DB by Protein ID:NP_082188Link to BLAST:NP_082188.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082188.1 568 Q9DBA6 568 100% 0 0

Chromosomal Locations for CCDS 48575.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 61695571 61696742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61698298 61698428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61699443 61699628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61702034 61702251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1707 nt):
ATGGGGCGGCAATGGGGACCCTCTATGAGAGTGGCGGAGCAGGCGGGCTGCGTGGTGAGCGCCTCGCGGG
CCGGACAGCCTGACGCGGGCTCGTGGAGCTGCAGCGGGGTGATTCTGAGCCGTAACCCAGGCCTAGTGCT
GTGCCACGGAGGCATCTTTACCCCCTTCCTGCGGACGGGCAGCGCGGCGCTGACCCAGACGGGCACCGCC
TTCCTGCCGGGCGACAGTTGCAGCGATGACCTACGTCTCCACGTGCAGTGGGGACCCACGGCTGCCAGCC
CTGCCGGTCGCGCGGATCAGGAACTCCCGGGGCTGTGCACGCCTCAGTGCGCAAGCCTGGGCCTCGAACC
CGGCGCCCCGAGCCGGGCCCGCGCGCGGCCTCTGCAGCCCCCGCGACCAGCGCAGCTGCTGTTGCTGCTC
AGCTGCCCGGCCTTCCGCTCGCATTTCGCTCGGCTCTTCGGGGCCGATGCGGTCGATCAATGGCACTTCG
TAAGCTCGGCGCCCGACGATGCGGTTTCGGAGGAGGAAGAGGAGGACCAGCTGCGCGCGCTCGGCTGGTT
CGCCCTGCTGCGGGTGCAGCGGGGCGCGGCGGCGGAGGAGAGGCGCGGACCGGTGGTGACCGTGGCACCG
CTCGGGGCCGTGGTCAAGGGCGCACCGCTGTTGGCTTGTGGCTCTCCGTTCGGTGCCTTCTGCCCGGACA
TCTTCCTCAACACGCTGAGCCGCGGCGTGCTCAGCAACGCGGCCGGGCCGCTGCTGCTCACCGACGCGCG
CTGCCTGCCGGGCACGGAAGGCGGCGGAGTGTTCGCCGCTCGACCTGCGGGTGCGCTGGTGGCTCTGGTG
GCCGCGCCGCTCTGCTGGAAGGCCCGCGAGTGGGTGGGCCTCACGCTGCTGTGCGCCGCCGCCCCGCTGC
TTCAGGTTGCCCGCTGGGCGCTCGCCCGTCTGCACCCCGGCTCCGCTTCCCTGTCTGTGCTGCTGCCGCC
ACCCGATGTGAGCACGCCACGGGGCCTGCCTCTGCGCGATCTCGGACCCCCGTGGGCGGCCGCGGCGGTG
CTGGTGGAGTGTGGTACCGTGTGGGGCTCCGGAGTGGTCGTGGCGCCTCGCCTGGTGGTCACCTGTCGCC
ATGTGGCACCCCGGGAAGCAGCCAGGGTGTTGGTACACTCCGCTACACCCAAGAATGTGGCAATCTGGGG
ACAAGTGGTGTTTGCCACTCAGGAGACCTCTCCATATGACATAGCAGTGGTGAGCCTGGAAGAGGAGCTG
AATGGTGTTCCCACGCCTGTCCCTGCTGGGCACTTCCATGAAGGCGAGCCTGTCAGCGTGGTGGGCTTTG
GTGTCTTTGGCCAGGCCTGCGGGCCCTCGGTGACCTCAGGCATCCTGTCGGCCGTGGTGCGTGTGGATGG
CAGCCCGGTGATGCTACAGACCACGTGCGCTGTGCATGGCGGCTCCAGCGGAGGACCTCTCTTCTCCTCG
GGCTCCGGGGACCTCCTGGGCATTGTCGCCAGCAACACTCGAGACAACAACACGGGAGCCACCTACCCAC
ACCTGAACTTCAGCATCCCCATCACGGTGCTCCAGCCAGCCCTGAAGCAGTACAGTCAGACTGGTGACCT
GGGTGGCCTCCGAGAGCTGGACCACACCACTGAGCCGGTCAGGGTCGTGTGGCGGCTGCAGCGGCCCCTG
TCCGAAGTCCCACGGAGCAAGCTCTGA

Translation (568 aa):
MGRQWGPSMRVAEQAGCVVSASRAGQPDAGSWSCSGVILSRNPGLVLCHGGIFTPFLRTGSAALTQTGTA
FLPGDSCSDDLRLHVQWGPTAASPAGRADQELPGLCTPQCASLGLEPGAPSRARARPLQPPRPAQLLLLL
SCPAFRSHFARLFGADAVDQWHFVSSAPDDAVSEEEEEDQLRALGWFALLRVQRGAAAEERRGPVVTVAP
LGAVVKGAPLLACGSPFGAFCPDIFLNTLSRGVLSNAAGPLLLTDARCLPGTEGGGVFAARPAGALVALV
AAPLCWKAREWVGLTLLCAAAPLLQVARWALARLHPGSASLSVLLPPPDVSTPRGLPLRDLGPPWAAAAV
LVECGTVWGSGVVVAPRLVVTCRHVAPREAARVLVHSATPKNVAIWGQVVFATQETSPYDIAVVSLEEEL
NGVPTPVPAGHFHEGEPVSVVGFGVFGQACGPSVTSGILSAVVRVDGSPVMLQTTCAVHGGSSGGPLFSS
GSGDLLGIVASNTRDNNTGATYPHLNFSIPITVLQPALKQYSQTGDLGGLRELDHTTEPVRVVWRLQRPL
SEVPRSKL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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