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Report for CCDS37772.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37772.1 Public Mus musculus 18 Tmco6 23 108 98 CCDS HistoryNCBI Gene:71983Re-query CCDS DB by CCDS ID:37772.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37772.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000007046.8 ENSMUSP00000007046.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000007046.8Link to Ensembl Protein Viewer:ENSMUSP00000007046.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000007046Re-query CCDS DB by Protein ID:ENSMUSP00000007046
Original member Current member NCBI NM_028036.3 NP_082312.3 Accepted alive Link to Nucleotide Sequence:NM_028036.3Link to Protein Sequence:NP_082312.3Re-query CCDS DB by Nucleotide ID:NM_028036Re-query CCDS DB by Protein ID:NP_082312Link to BLAST:NP_082312.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082312.3 494 Q8BQX5-1 494 100% 0 0

Chromosomal Locations for CCDS 37772.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 36735172 36735256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36735388 36735500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36737457 36737572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36737669 36737852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36738096 36738200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36738362 36738447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36738628 36738744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36738953 36739064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36739155 36739341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36741052 36741146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36741662 36741829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36742047 36742163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1485 nt):
ATGTGGAATCGGCGGCAGGGCCGCCTCAGGACGCTGGCGTTTGGGGTGGAGGAGCTGCGGCGCCGCCGGC
GGGAGCGGGAGGCAGCCCTGCGGAAGGCGCGGAGGGAGCAGCAGTTAGTCAGCAAGAGGCTGCTGAGGGA
AGACGCCCCGGAAGAAGTCGGAGGCCAGAGTGCAGCTGTGCTCCTTGGGGAAGCCGAGGTCCAGCAGTTC
CTTCGGCTCGCCCAACGGGGGACAGATGAAAAGGAGAGGGAGAAGGCTCTGGTCAGCCTTCGTCGAGGCT
TGCAGCACCCTGACACACAGCAAACCTTCATCAGGCTGGAGGGCAGCATGCGGACCCTTGTTGGGATTTT
GACCAGCAACCGGGCCTTGTTGCAGCTTGAGGCGGCTCGGTGCCTTCATGAGCTCTCTCATTCTGAGCAG
TCTGCAGTGGCTGAGGCCTGCCTGCCAGCGACTTCCTACCTCCTCACCTACCTCTCTGGTCACAGCTCAG
ATTTCATAGAGCTGTGTCTGTACACACTGGGGAACCTCATCGTGGAGAGTGAGGCCGTGAGAAAGCAGCT
CCTGCCGCAGGGCATTGTCCCAGCCTTTGCTGCCTGCATCCAGTCCCCCCATGTGGCTGTGCTGGAAGCA
CTTGGATATGCCTTGTCCCAGCTTCTGCAGGCTAAGGAAGCCCCAGAGAAGATCATTCCCTCTATTCTGG
ATTCCAGTCTTCCCCAGCAGATGCTATGGTTGATGCAACCAGGCCCGAAGCTGAACCTTGGGGTTGCCAT
GGAGTTTGCTTGGTGCCTTCACTATATCATCTGCAGCCAGGTCAACAATGCTGTACTCCTTACCCATGGG
GCTCTGCCCACGTTGGCACTGCTGCTTTTGGACTTGGCTGGGACTGTGCAGAGAATGGATGATGTGGGAC
TAGAGCTGCTTGCATGCCCCGTGCTTCGGTGTCTAAGCAACCTGTTAACAGAAGTGCCAGCGGAGGTCAT
GGGACAGCAAATGGAGCTCAGAGACGAGCGACTTGTGGCAGCCTTATTTATCTTTCTCCAGTTCTTCCTT
CAGAAACAGCCTGCCTTGCTACCTGAGGGCCTCTGGCTCCTCAACAACCTCACTGCAAACAGTCCTACTT
TTTGTACCTCCTTGCTCTCTCTGGATCTGATCGAGCCGCTCTTGCAGTTGTTGCCACTATCAAATGCAGT
ATGCATGTTGGTGCTCACAGTTCTGTGCAATGTCGTAGAGAAGGGTCCAGCTTACTGCCAGCGGTTGTGG
CCAGGACCCCTGCTCTCCTGCGTGCTTAACACACTGGCTCTCTCTGACACCGAAGTAGTAGGCCAGAGTT
TGGAGCTGCTGCAGCTGCTATTCTTGCATCAGCCAGAGGCTGCCCGAGCCTTCCTGCAGCAGTCAGGGCT
GCAGGCCCTAGAAAAGCTCCAGGAGGAAACTCAGCTTCAGGAGAGGATACACGCGCTCCAGCAGATAGCT
GCTACCCATGGATGA

Translation (494 aa):
MWNRRQGRLRTLAFGVEELRRRRREREAALRKARREQQLVSKRLLREDAPEEVGGQSAAVLLGEAEVQQF
LRLAQRGTDEKEREKALVSLRRGLQHPDTQQTFIRLEGSMRTLVGILTSNRALLQLEAARCLHELSHSEQ
SAVAEACLPATSYLLTYLSGHSSDFIELCLYTLGNLIVESEAVRKQLLPQGIVPAFAACIQSPHVAVLEA
LGYALSQLLQAKEAPEKIIPSILDSSLPQQMLWLMQPGPKLNLGVAMEFAWCLHYIICSQVNNAVLLTHG
ALPTLALLLLDLAGTVQRMDDVGLELLACPVLRCLSNLLTEVPAEVMGQQMELRDERLVAALFIFLQFFL
QKQPALLPEGLWLLNNLTANSPTFCTSLLSLDLIEPLLQLLPLSNAVCMLVLTVLCNVVEKGPAYCQRLW
PGPLLSCVLNTLALSDTEVVGQSLELLQLLFLHQPEAARAFLQQSGLQALEKLQEETQLQERIHALQQIA
ATHG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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