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Report for CCDS50726.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50726.1 Public Mus musculus 2 Erv3 23 108 98 CCDS HistoryNCBI Gene:71995Re-query CCDS DB by CCDS ID:50726.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50726.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040941.2 ENSMUSP00000047030.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040941.2Link to Ensembl Protein Viewer:ENSMUSP00000047030.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000040941Re-query CCDS DB by Protein ID:ENSMUSP00000047030
Original member Current member NCBI NM_001166206.1 NP_001159678.1 Accepted alive Link to Nucleotide Sequence:NM_001166206.1Link to Protein Sequence:NP_001159678.1Re-query CCDS DB by Nucleotide ID:NM_001166206Re-query CCDS DB by Protein ID:NP_001159678Link to BLAST:NP_001159678.1

Chromosomal Locations for CCDS 50726.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 131855835 131856437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (603 nt):
ATGGGTTTTAACCTAAGGATGCTGTTTTGTCTGGCTATATTTCCTTATGTTCTTTCCTCGAATCTAATTT
CAAAACCCCAAGGTTCTCAGGGTCCTAAACAGACCAGACCATCCCCTAAGGCATGGAAGTTCCAGGTAAT
TGCCATAGAAAATCAGAACAAGACCATAGCCTCTACCTTCTGTCTGGTGACAGGATGTGCTAGTACTATA
AGCCTCACCTTTGATATAAGGGACACCTGCCAAGGGAAATGTATACATGAACCCTACAATGCTATGACCT
CTCCTATATATATTTGTTTCGTATATGAGCAAACTCGCTCAGACTGTAAGGACCCAAATTATGGAGGATG
TCCACACTGGGGCTGCAAATATCATAGTACTTGGCCCAGATGGGGAGGAGAAAGGCCATCCAGACTCAAC
TCGGTTGATTGGCATACTAAGGTCATGTATTCGATCCCTGACCCCTGGAATGACAGATGGAGAATAGGGG
TTGAGGGTCATATCTACAGACATAATGAGAGGGATACAGGCTATGACAAGAAGACTAAGATACTCATCTT
TAGAGGTTTAGACAGATTTCCATCTCCAAATTCCTCGGGTTGA

Translation (200 aa):
MGFNLRMLFCLAIFPYVLSSNLISKPQGSQGPKQTRPSPKAWKFQVIAIENQNKTIASTFCLVTGCASTI
SLTFDIRDTCQGKCIHEPYNAMTSPIYICFVYEQTRSDCKDPNYGGCPHWGCKYHSTWPRWGGERPSRLN
SVDWHTKVMYSIPDPWNDRWRIGVEGHIYRHNERDTGYDKKTKILIFRGLDRFPSPNSSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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