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Report for CCDS14953.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14953.1 Public Mus musculus 1 Osgepl1 23 108 98 CCDS HistoryNCBI Gene:72085Re-query CCDS DB by CCDS ID:14953.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14953.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027265.9 ENSMUSP00000027265.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027265.9Link to Ensembl Protein Viewer:ENSMUSP00000027265.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000027265Re-query CCDS DB by Protein ID:ENSMUSP00000027265
Original member Current member EBI ENSMUST00000114484.7 ENSMUSP00000110128.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114484.7Link to Ensembl Protein Viewer:ENSMUSP00000110128.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114484Re-query CCDS DB by Protein ID:ENSMUSP00000110128
Original member Current member NCBI NM_001285839.1 NP_001272768.1 Accepted alive Link to Nucleotide Sequence:NM_001285839.1Link to Protein Sequence:NP_001272768.1Re-query CCDS DB by Nucleotide ID:NM_001285839Re-query CCDS DB by Protein ID:NP_001272768Link to BLAST:NP_001272768.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001272768.1 414 Q6PEB4-1 414 100% 0 0

Chromosomal Locations for CCDS 14953.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 53314879 53315099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53317902 53318289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53319943 53320296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53321080 53321210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53321496 53321567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53323167 53323245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1245 nt):
ATGCTAATGTTAAGAAGGACAGCAGGAGCTATTCCCAAGCCCCCAAAGAGTAAAGTTTATGGATTTTTAA
GAAGATTTAGTGTTCATCCCAGAACTCTCTCTTGTCATAAACTGGTCCTGGGAATTGAAACCAGCTGTGA
TGACACAGGAGCGGCTGTGGTGGATGAAACTGGGAATGTGCTGGGGGAAGCACTGCACTCCCAAACTCAG
GTTCATCTGAAAACAGGTGGGATTGTTCCTCCAGTAGCTCAACAACTTCACAGAGAAAATATTCAACGAA
TAGTAGAAGAAACTCTTTCTGCCTGTAGAATCACCCCAAGCGATCTCTCAGCAATTGCAACTACCATCAA
ACCGGGACTGGCCCTAAGCTTGGGAGTTGGCTTATCCTTTAGCTTACAGCTAGTAAATCAGTTTAAAAAG
CCATTCATCCCGATTCATCACATGGAGGCTCACGCACTGACTATTAGGCTCACCAATAAAGTAGAATTTC
CTTTTTTAGTTCTTTTGATTTCTGGCGGTCACTGCCTGTTGGCATTAGTCCAAGGTGTTTCCGATTTCCT
GCTCCTTGGGAAGTCTTTGGACATAGCACCAGGCGACATGCTTGACAAGGTGGCAAGAAGACTTTCTTTA
ATCAAACATCCAGAATGTTCTACAATGAGTGGTGGAAAAGCTATAGAACAGTTGGCCAAAGACGGAAATA
GATTCCATTTTACTATCAATCCACCTATGCAGAATGCTAAGAATTGCGATTTTTCTTTCACGGGACTTCA
ACATATTACTGATAAGCTAATAACACACAAGGAAAAAGAAGAAGGCATTGAGAAGGGGCAAATCCTGTCA
TCAGCTGCAGACATTGCTGCTGCGGTACAGCATGCAACAGCGTGCCACCTTGCGAAAAGAACACATCGCG
CTATTCTGTTTTGCAAGCAGAAAAATTTGCTCTCTCCAGCTAACGCAGTATTAGTTGTATCTGGAGGTGT
TGCAAGTAACTTGTACATCCGAAAAGCATTGGAAATTGTCGCAAATGCAACGCAGTGCACGTTGTTGTGT
CCACCTCCAAGACTGTGCACTGACAATGGCATCATGATTGCATGGAATGGAATTGAAAGATTACGTGCTG
GCTTGGGCGTTTTACATGATGTAGAAGACATCCGATATGAACCAAAATGTCCTCTTGGAGTAGACATATC
CAGAGAAGTTGCAGAAGCTGCCATAAAAGTACCGCGATTAAAAATGGCACTTTGA

Translation (414 aa):
MLMLRRTAGAIPKPPKSKVYGFLRRFSVHPRTLSCHKLVLGIETSCDDTGAAVVDETGNVLGEALHSQTQ
VHLKTGGIVPPVAQQLHRENIQRIVEETLSACRITPSDLSAIATTIKPGLALSLGVGLSFSLQLVNQFKK
PFIPIHHMEAHALTIRLTNKVEFPFLVLLISGGHCLLALVQGVSDFLLLGKSLDIAPGDMLDKVARRLSL
IKHPECSTMSGGKAIEQLAKDGNRFHFTINPPMQNAKNCDFSFTGLQHITDKLITHKEKEEGIEKGQILS
SAADIAAAVQHATACHLAKRTHRAILFCKQKNLLSPANAVLVVSGGVASNLYIRKALEIVANATQCTLLC
PPPRLCTDNGIMIAWNGIERLRAGLGVLHDVEDIRYEPKCPLGVDISREVAEAAIKVPRLKMAL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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