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Report for CCDS19186.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19186.1 Public Mus musculus 5 Supt7l 23 108 98 CCDS HistoryNCBI Gene:72195Re-query CCDS DB by CCDS ID:19186.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19186.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065388.10 ENSMUSP00000067337.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065388.10Link to Ensembl Protein Viewer:ENSMUSP00000067337.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000065388Re-query CCDS DB by Protein ID:ENSMUSP00000067337
Original member Current member EBI ENSMUST00000201769.3 ENSMUSP00000144065.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000201769.3Link to Ensembl Protein Viewer:ENSMUSP00000144065.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000201769Re-query CCDS DB by Protein ID:ENSMUSP00000144065
Original member Current member NCBI NM_028150.2 NP_082426.1 Accepted alive Link to Nucleotide Sequence:NM_028150.2Link to Protein Sequence:NP_082426.1Re-query CCDS DB by Nucleotide ID:NM_028150Re-query CCDS DB by Protein ID:NP_082426Link to BLAST:NP_082426.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082426.1 412 Q9CZV5 412 100% 0 0

Chromosomal Locations for CCDS 19186.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 31515664 31515926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31518267 31518504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31520083 31520407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31522654 31523066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1239 nt):
ATGCTGAGGTACTGGGGAGAGATACCAATACCGTCAGGACAGACCAACAGAAGTTCCTTTGATCTGCTCC
CACGGGAGTTCCGTCTGGTGGAAGTCCATGACCCGCCCCTGCACCAGCCCTCAGCCAACAAGCCGAAGCC
CCCCACGATGCTGGACATTCCCTCAGAACCGTGTAGCCTCACCATCCATACCATTCAGTTGATCCAACAC
AACCGACGCCTGCGCAGCCTTATTGCCACAGCTCAGACCCAGAGTCAGCAGCAGACAGAGGGTGTGAAGG
CTGAAGAGAGTGAACCTCTTCCCTCCTGCCCTGGCTCACCTCCTCTCCCTGATGACCTCCAGCCTTTAGA
CTGTAAAAATCCCAATGCTCCATTCCAGATCCGGCACAGTGACCCAGAGAGTGACTTTTACCGCGGGAAA
GGAGAGCCTGTGACAGAGCTGAGCTGGCACTCCTGCCGGCAGCTCCTCTATCAAGCAGTCGCCACAATCC
TGGCCCACACAGGCTTTGAGTGTGCTAATGAAAGTGTCCTGGAGACCCTAACTGATGTGGCACATGAATA
CTGCCTCAAGTTCACCAAGCTGCTGCGCTTTGCTGTCGACCGAGAGGCCCTGCTGGGACAGACTCCTTTC
CCTGATGTAATGGAACAGGTGTTCCATGAAGTGGGCATTGGCAGTGTGCTCTCCCTGCAGAAGTTCTGGC
AGCACCGCATCAAGGACTATCACACTTACATGCTACAGATTAGTAAGCAGCTCTCTGAAGAATATGAAAG
GATTGTGAATCCCGAGAAGGCCACAGAAGACACTAAACCTGTGAAGATCAAGGAAGAGCCTGTGAGCGAC
ATCACATTTCCTGTCAGTGAGGAGCTAGAAGCGGACCTTGCTTCTGGAGATCAGTCCTTACCCATTGGGG
TCCTCGGGGCTCAGAGTGAGCGCTTCCCATCCAACCTGGAGGTGGAGGCTTCGCCACAGGCTCCAAGTGC
AGAGGTCAATGCTTCTCCTCTCTGGAACCTGGCTCACGTGAAAATGGAACCTCAAGAAAGTGAAGAAGGC
AATGTGTCTGCGCATGGGGTGCTGGGCAGTGATGTCTTTGAGGAGCCAATGTCAGGCATGAGTGAGGCTG
GACTCCCTCAGAGCCCTGACGACTCAGACAGCAGCTATGGTTCCCACTCCACTGACAGCCTCATGGGGTC
CTCCCCTGTGTTCAATCAGCGCTGCAGGAAGAGGATGAGGAAGATTTAA

Translation (412 aa):
MLRYWGEIPIPSGQTNRSSFDLLPREFRLVEVHDPPLHQPSANKPKPPTMLDIPSEPCSLTIHTIQLIQH
NRRLRSLIATAQTQSQQQTEGVKAEESEPLPSCPGSPPLPDDLQPLDCKNPNAPFQIRHSDPESDFYRGK
GEPVTELSWHSCRQLLYQAVATILAHTGFECANESVLETLTDVAHEYCLKFTKLLRFAVDREALLGQTPF
PDVMEQVFHEVGIGSVLSLQKFWQHRIKDYHTYMLQISKQLSEEYERIVNPEKATEDTKPVKIKEEPVSD
ITFPVSEELEADLASGDQSLPIGVLGAQSERFPSNLEVEASPQAPSAEVNASPLWNLAHVKMEPQESEEG
NVSAHGVLGSDVFEEPMSGMSEAGLPQSPDDSDSSYGSHSTDSLMGSSPVFNQRCRKRMRKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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