NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49284.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49284.1 Public Mus musculus 13 Spata31d1a 23 108 98 CCDS HistoryNCBI Gene:72219Re-query CCDS DB by CCDS ID:49284.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49284.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066510.7 ENSMUSP00000128533.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066510.7Link to Ensembl Protein Viewer:ENSMUSP00000128533.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000066510Re-query CCDS DB by Protein ID:ENSMUSP00000128533
Original member Current member EBI ENSMUST00000224982.1 ENSMUSP00000152919.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000224982.1Link to Ensembl Protein Viewer:ENSMUSP00000152919.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000224982Re-query CCDS DB by Protein ID:ENSMUSP00000152919
Original member Current member NCBI NM_028157.2 NP_082433.2 Accepted alive Link to Nucleotide Sequence:NM_028157.2Link to Protein Sequence:NP_082433.2Re-query CCDS DB by Nucleotide ID:NM_028157Re-query CCDS DB by Protein ID:NP_082433Link to BLAST:NP_082433.2

Chromosomal Locations for CCDS 49284.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 59700302 59704022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 59704141 59704201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 59705046 59705088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 59705965 59706150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4011 nt):
ATGGAGAAGATTCTCTCAGCTCTGAATGGCCTCAGTGAGACATGGCTGACCCTAGGCTCAGCTTCCTACC
ACATAGACCTCAACTACACTCTTCTGAGTGGACTGGGGCTACTGCTTCTGTACATCTCCTACCTGATATT
GAAACTGCTTATACATTTGCTGGGGAGAAAGAAATACACCCCAAAGCGGCAGAACAGCATCAGGCGCAAA
CAAAGGAAAGCATTTAAACGGAGGAAAGTTGGCCCGAGAGACCCTGAGGAAGGAAGGAGGCTGCAGACAG
TCCTACAAAGCCCAGACAAGCCATATGATCCCACGGGCTTTCGGCAAGCGCTATGCCCAGATCCCCGTTG
TCGCGTATGTAACAAAGCAAGCACTCAGGTCAGACACCTGCTCTCTCAGGCTCCCCTGGAAGATGGTGCT
GCCTCGGTGTCCTCTTTGCCATCTACCGCTCCCCTGATAGAGGCTTCGCTTGCTCTGCCCCCTCACTTTC
CTGCCAACCGACCAGGACACCCAGCTCCAGAAACTCCTCCCCACACTTCTCGCTCCATCCACTTGCAGAA
CCAAATCACTCCTTTGGATGGTGTATCTTCTCCCCCCATATCGCTCAGCGCCTCTCTGTCACCACAAGCT
GCTGCCTCCTTAAACCCTGCAGTGTTACCGGCCCACACCCCACGCAGAACACTTGCCTCTTTTCCACACC
TACATCCAAACGCCACTCAGGAAGCACAGTTAGCTCTCCAAGCAGAAGTTCCCCAGCCTCCCGTGGAAAG
CCCTAGGGAGCGGTCCCCCAGTGTCTCAACTGCCAAAAGCACTGTCTATGAGCCAGCATCCTCCCGGCCA
CAGTTCACTGCTGAAGACCAGTCCCTGACAAATTCGACACATGTTATTAACCATCAGCCTCCTCCATCAG
ACTCCTATGCTTCTCAGGGCTCATACCAGGGACTCACAAAGGCCTATGCTGTGGAGCCTGGGGATCATTT
GTCTCCCAGCCCCGATGTCTTAGCACTCTTCACGAAGCAAGAGGAAGGGGATGCTGATGGCACTGTGTAT
AAACTTAAAAGGGAGAAAGCAGTATCTTATATAATGCCATCAAATACTTCAGGGGAAATCTCAGCATCAA
CTGCTGGTCTAGAGAACTTGGAAGTCTCCCACCTCTTAGGTAATGAAAAGGGAAAGCCAGAGGACCCTCA
CCTACTCCAACAGCCCTCTCATCTGAAGAACTCTGAGGACCAGTCAGAGATAAAGGACATCCAGCTCTTC
TGGGGTCTCCCTTCTCTCCACAGTGAGTCCCTGAAACATGAGGCTGCCAACACAGGTAACAGTTACCCAG
GAAGGGACTATTTCAACAAAGTGGCTCAGGCCTCCACAGGCAGTCATTCTTCCAATCTTACTTACTCCAC
ACCTCTGCCCTTGCCTGAGAGTGACCAACAAGGGCAGATTGTACCTCAGTCTCAGATCATGCCTGACTCC
CTTGCCAACTCTAAGGCCCAGCCTCAATCCCTAGCCCAACTCCTGTCACCTTCTCCTCAGTCCCAGCTTG
GGATATGTGGGGTGCGTTTTCATAGCCTGAAGAATGAGGCACAGCCTCTCACCCCATGTGAAATTCAACA
GCTGGAATACAACCTATTGCAAAAAGCGCTGCAAAGTTTCTTGGGTTTACCCACTCTAACTGAAACATTC
CAAGAAAGCTTCTGTCCCCCACCTCCTAAAATCTCCTCAACCAGAAATTCATCCAAGGTCCATGCTCCCA
AGACAATCCTTCCTGGAGACTTCCCTCTCAGCCATACACTCAAGAGGAAACTCGAACACCATCTTCGAAA
GAGACTCATCCAGCGACACTGGGGCTTGCCCCACAGGATCCTTGAATCTCTGTCATTCTTGAGTCCTCAT
TCAGAAATTCCTGAGGCCCCCAAGCCAAGGGACACCCATGGACTCTCACGGGTCTCTCTCTATAAGTTTA
ATGCCAACACAAACCTACCAAGCTCTGGGGTAAGCCAATCGGAAAGATCCTGTAAGAAGCCCTTAGAGAG
TCACCCTCCACAGGAAAAAGACATCAACGTTCAGAGACACCGTCCAGGGATAAACCAAAGAGATCCCATA
CAATGTAAGTCCTGTGGAGCTACAAAGAGCACTGTACATTCTAATTCTGAGACAGACCCAGAACTTCAGC
TAGGGAATATGTCTGGAAACATTTCAAAGGCTTCATGGGTCAGACAGTGCCAGAAAGAATGTGAAGCTTA
CCTGCAAAAACATCTGGGCAAGGACACTAAAGAAATTAGTGGGAGTGAGAGGCCTAGTGCTGTGGACAGC
TCAAGGCATTCTCGGAACATGACACAGCCTCCACCTGAGACCTGCCCCAGACAGATGGAACCATTGGCAT
GTGAGGAGGATGCACTGACGAGGCACCCCCACAGCTTAGCGATTGGTCCTAGCAAAGAGAAGACGCTGGA
AGAACACATCACAGCCTTCCGCAGAAGGATGGCATTTGGCCTCCCAAAAAGGGTTGAGGAGTCCTTAGAA
TCAGACCTTACAAAAGCAGAGCCTTCTCAGCCTTTCCCTCAGCTCCACATTCAAGCCCACAACGTTTCTA
GAGCAGACCCTGCCAAGTCCTCCAGGTCCCTTCGGAGAAACACTACTGGAGATAGAATGGGGACAATGAC
TTCAGTCCCCACCCAACAGAGCCCTCTCCCTGCTGCCTCACTGGTGGGCCACAGCCAGCCAGCCTCTGAG
AACAAGAAGGTGGGTGTAGATAGAGACCTTAGCATAGCCCCAAGGGACAGAGAGCCAACCCAGCACTGGA
CACCCAGGAGGGCAGACAAAGGTGACGTGCAGCAGTCTGGATCACACAACAGACCTGGCCCAGAGCTGCC
CATGAGCCCAGGTGGGCCAACACATGAGAGATTGGCTTCCAGCACCAACACACAAGGGTCTCAGGAAGAA
AGGAGGAGCCGGGAAGACGGCTCCGAGGCCGAGGGCTCCACAGAGCTACACAAGGGAGAGCAACTCCCGG
GTCTTCACCCACAGTCCACTAAGAGCTTGAAAGGCACCCAAGGCCTGTGCTCCCCAGGGAGCCCTGTGAC
TGCATGTCAGTCCCCACAGGGAATGTCATTTCTCCACAACTCTGAGAGCCCTGACTCTAAAAGTCAGGTG
TCCACAGAAGTTCAGCTGAACTCAGAGGGCGGGACACACAACCAAGTGCCAGACCTGCCTGCCACGCCCT
TTGCCCCACAAGAAATGACTTCCAAACCCCAGGGCCCCTCCGGTGGGGACATGGCAGTTTCTCAGGTACT
GCGTGTGCACATGCCCACTGTGGGCATCAGCATGGAGTCGAGGCAGGGTCCCTGGGTCCCTGCATATGTC
TCAGGCAAGAGCAAGAACAAGGACTGTCTCCCTGCTGCCAGGGGATTGCCACAGCTGGCAACTGAGGCAG
GAAAGTTTGGGGGAGGGGATGCAGGCTTAGGGACATCCCAGACCACAGGGAAGGGACACTGTGTTCAGGC
CAGGGCACCAGAGGAGACACAAGGACTCACAGCCTCCCCAGCACTGACACCTAAGAGTCAGCCTCAGGAA
AATCAGTTCACCAGCCAGGTGAAGGGCTTCTGGCAGAGGCTGTCCCCTGGGAAGAAACACAAAGGACAGG
AAAAGTCCCTGGCCAAGGGCTGCTCTCCATTAGCATCTGGGAAGGGCACAAGCCCCATCAAAGGGAGAAG
TGAGTTTTGTGGGAACCCTGAAGCTCAGAACTGTGTGAGGGAGCCTGGGATGGTCCTGAGGAAGCAGCTG
GGGCACAGGCATGGGACAGTCACCCCCTGCCCCCAGGTCCCTGTGTCTCCCCTCATGGGGTCTGAAGGAG
CTCAGCAGGAGGTGCCCCTGCAGGCTCAGGCAGAGCCTGTCCAGAGGCTGCCCCACTTGTGCTGCAGAGG
TTCCTGCTCTCCAGTGCCAAGGGCTGAGTCCTGCAGCCCAGGACAGGGACAGACAGCCCCTGAGAGGTGT
GGCCCTACAGGAAAAAGCTAA

Translation (1336 aa):
MEKILSALNGLSETWLTLGSASYHIDLNYTLLSGLGLLLLYISYLILKLLIHLLGRKKYTPKRQNSIRRK
QRKAFKRRKVGPRDPEEGRRLQTVLQSPDKPYDPTGFRQALCPDPRCRVCNKASTQVRHLLSQAPLEDGA
ASVSSLPSTAPLIEASLALPPHFPANRPGHPAPETPPHTSRSIHLQNQITPLDGVSSPPISLSASLSPQA
AASLNPAVLPAHTPRRTLASFPHLHPNATQEAQLALQAEVPQPPVESPRERSPSVSTAKSTVYEPASSRP
QFTAEDQSLTNSTHVINHQPPPSDSYASQGSYQGLTKAYAVEPGDHLSPSPDVLALFTKQEEGDADGTVY
KLKREKAVSYIMPSNTSGEISASTAGLENLEVSHLLGNEKGKPEDPHLLQQPSHLKNSEDQSEIKDIQLF
WGLPSLHSESLKHEAANTGNSYPGRDYFNKVAQASTGSHSSNLTYSTPLPLPESDQQGQIVPQSQIMPDS
LANSKAQPQSLAQLLSPSPQSQLGICGVRFHSLKNEAQPLTPCEIQQLEYNLLQKALQSFLGLPTLTETF
QESFCPPPPKISSTRNSSKVHAPKTILPGDFPLSHTLKRKLEHHLRKRLIQRHWGLPHRILESLSFLSPH
SEIPEAPKPRDTHGLSRVSLYKFNANTNLPSSGVSQSERSCKKPLESHPPQEKDINVQRHRPGINQRDPI
QCKSCGATKSTVHSNSETDPELQLGNMSGNISKASWVRQCQKECEAYLQKHLGKDTKEISGSERPSAVDS
SRHSRNMTQPPPETCPRQMEPLACEEDALTRHPHSLAIGPSKEKTLEEHITAFRRRMAFGLPKRVEESLE
SDLTKAEPSQPFPQLHIQAHNVSRADPAKSSRSLRRNTTGDRMGTMTSVPTQQSPLPAASLVGHSQPASE
NKKVGVDRDLSIAPRDREPTQHWTPRRADKGDVQQSGSHNRPGPELPMSPGGPTHERLASSTNTQGSQEE
RRSREDGSEAEGSTELHKGEQLPGLHPQSTKSLKGTQGLCSPGSPVTACQSPQGMSFLHNSESPDSKSQV
STEVQLNSEGGTHNQVPDLPATPFAPQEMTSKPQGPSGGDMAVSQVLRVHMPTVGISMESRQGPWVPAYV
SGKSKNKDCLPAARGLPQLATEAGKFGGGDAGLGTSQTTGKGHCVQARAPEETQGLTASPALTPKSQPQE
NQFTSQVKGFWQRLSPGKKHKGQEKSLAKGCSPLASGKGTSPIKGRSEFCGNPEAQNCVREPGMVLRKQL
GHRHGTVTPCPQVPVSPLMGSEGAQQEVPLQAQAEPVQRLPHLCCRGSCSPVPRAESCSPGQGQTAPERC
GPTGKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH