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Report for CCDS49284.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
49284.1 |
Public |
Mus musculus |
13 |
Spata31d1a |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:72219](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:49284.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 13 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 49284.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000066510.7 |
ENSMUSP00000128533.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000066510.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000128533.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000066510](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000128533](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000224982.1 |
ENSMUSP00000152919.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000224982.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000152919.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000224982](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000152919](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_028157.2 |
NP_082433.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_028157.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_082433.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_028157](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_082433](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_082433.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 49284.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (4011 nt): ATGGAGAAGATTCTCTCAGCTCTGAATGGCCTCAGTGAGACATGGCTGACCCTAGGCTCAGCTTCCTACC ACATAGACCTCAACTACACTCTTCTGAGTGGACTGGGGCTACTGCTTCTGTACATCTCCTACCTGATATT GAAACTGCTTATACATTTGCTGGGGAGAAAGAAATACACCCCAAAGCGGCAGAACAGCATCAGGCGCAAA CAAAGGAAAGCATTTAAACGGAGGAAAGTTGGCCCGAGAGACCCTGAGGAAGGAAGGAGGCTGCAGACAG TCCTACAAAGCCCAGACAAGCCATATGATCCCACGGGCTTTCGGCAAGCGCTATGCCCAGATCCCCGTTG TCGCGTATGTAACAAAGCAAGCACTCAGGTCAGACACCTGCTCTCTCAGGCTCCCCTGGAAGATGGTGCT GCCTCGGTGTCCTCTTTGCCATCTACCGCTCCCCTGATAGAGGCTTCGCTTGCTCTGCCCCCTCACTTTC CTGCCAACCGACCAGGACACCCAGCTCCAGAAACTCCTCCCCACACTTCTCGCTCCATCCACTTGCAGAA CCAAATCACTCCTTTGGATGGTGTATCTTCTCCCCCCATATCGCTCAGCGCCTCTCTGTCACCACAAGCT GCTGCCTCCTTAAACCCTGCAGTGTTACCGGCCCACACCCCACGCAGAACACTTGCCTCTTTTCCACACC TACATCCAAACGCCACTCAGGAAGCACAGTTAGCTCTCCAAGCAGAAGTTCCCCAGCCTCCCGTGGAAAG CCCTAGGGAGCGGTCCCCCAGTGTCTCAACTGCCAAAAGCACTGTCTATGAGCCAGCATCCTCCCGGCCA CAGTTCACTGCTGAAGACCAGTCCCTGACAAATTCGACACATGTTATTAACCATCAGCCTCCTCCATCAG ACTCCTATGCTTCTCAGGGCTCATACCAGGGACTCACAAAGGCCTATGCTGTGGAGCCTGGGGATCATTT GTCTCCCAGCCCCGATGTCTTAGCACTCTTCACGAAGCAAGAGGAAGGGGATGCTGATGGCACTGTGTAT AAACTTAAAAGGGAGAAAGCAGTATCTTATATAATGCCATCAAATACTTCAGGGGAAATCTCAGCATCAA CTGCTGGTCTAGAGAACTTGGAAGTCTCCCACCTCTTAGGTAATGAAAAGGGAAAGCCAGAGGACCCTCA CCTACTCCAACAGCCCTCTCATCTGAAGAACTCTGAGGACCAGTCAGAGATAAAGGACATCCAGCTCTTC TGGGGTCTCCCTTCTCTCCACAGTGAGTCCCTGAAACATGAGGCTGCCAACACAGGTAACAGTTACCCAG GAAGGGACTATTTCAACAAAGTGGCTCAGGCCTCCACAGGCAGTCATTCTTCCAATCTTACTTACTCCAC ACCTCTGCCCTTGCCTGAGAGTGACCAACAAGGGCAGATTGTACCTCAGTCTCAGATCATGCCTGACTCC CTTGCCAACTCTAAGGCCCAGCCTCAATCCCTAGCCCAACTCCTGTCACCTTCTCCTCAGTCCCAGCTTG GGATATGTGGGGTGCGTTTTCATAGCCTGAAGAATGAGGCACAGCCTCTCACCCCATGTGAAATTCAACA GCTGGAATACAACCTATTGCAAAAAGCGCTGCAAAGTTTCTTGGGTTTACCCACTCTAACTGAAACATTC CAAGAAAGCTTCTGTCCCCCACCTCCTAAAATCTCCTCAACCAGAAATTCATCCAAGGTCCATGCTCCCA AGACAATCCTTCCTGGAGACTTCCCTCTCAGCCATACACTCAAGAGGAAACTCGAACACCATCTTCGAAA GAGACTCATCCAGCGACACTGGGGCTTGCCCCACAGGATCCTTGAATCTCTGTCATTCTTGAGTCCTCAT TCAGAAATTCCTGAGGCCCCCAAGCCAAGGGACACCCATGGACTCTCACGGGTCTCTCTCTATAAGTTTA ATGCCAACACAAACCTACCAAGCTCTGGGGTAAGCCAATCGGAAAGATCCTGTAAGAAGCCCTTAGAGAG TCACCCTCCACAGGAAAAAGACATCAACGTTCAGAGACACCGTCCAGGGATAAACCAAAGAGATCCCATA CAATGTAAGTCCTGTGGAGCTACAAAGAGCACTGTACATTCTAATTCTGAGACAGACCCAGAACTTCAGC TAGGGAATATGTCTGGAAACATTTCAAAGGCTTCATGGGTCAGACAGTGCCAGAAAGAATGTGAAGCTTA CCTGCAAAAACATCTGGGCAAGGACACTAAAGAAATTAGTGGGAGTGAGAGGCCTAGTGCTGTGGACAGC TCAAGGCATTCTCGGAACATGACACAGCCTCCACCTGAGACCTGCCCCAGACAGATGGAACCATTGGCAT GTGAGGAGGATGCACTGACGAGGCACCCCCACAGCTTAGCGATTGGTCCTAGCAAAGAGAAGACGCTGGA AGAACACATCACAGCCTTCCGCAGAAGGATGGCATTTGGCCTCCCAAAAAGGGTTGAGGAGTCCTTAGAA TCAGACCTTACAAAAGCAGAGCCTTCTCAGCCTTTCCCTCAGCTCCACATTCAAGCCCACAACGTTTCTA GAGCAGACCCTGCCAAGTCCTCCAGGTCCCTTCGGAGAAACACTACTGGAGATAGAATGGGGACAATGAC TTCAGTCCCCACCCAACAGAGCCCTCTCCCTGCTGCCTCACTGGTGGGCCACAGCCAGCCAGCCTCTGAG AACAAGAAGGTGGGTGTAGATAGAGACCTTAGCATAGCCCCAAGGGACAGAGAGCCAACCCAGCACTGGA CACCCAGGAGGGCAGACAAAGGTGACGTGCAGCAGTCTGGATCACACAACAGACCTGGCCCAGAGCTGCC CATGAGCCCAGGTGGGCCAACACATGAGAGATTGGCTTCCAGCACCAACACACAAGGGTCTCAGGAAGAA AGGAGGAGCCGGGAAGACGGCTCCGAGGCCGAGGGCTCCACAGAGCTACACAAGGGAGAGCAACTCCCGG GTCTTCACCCACAGTCCACTAAGAGCTTGAAAGGCACCCAAGGCCTGTGCTCCCCAGGGAGCCCTGTGAC TGCATGTCAGTCCCCACAGGGAATGTCATTTCTCCACAACTCTGAGAGCCCTGACTCTAAAAGTCAGGTG TCCACAGAAGTTCAGCTGAACTCAGAGGGCGGGACACACAACCAAGTGCCAGACCTGCCTGCCACGCCCT TTGCCCCACAAGAAATGACTTCCAAACCCCAGGGCCCCTCCGGTGGGGACATGGCAGTTTCTCAGGTACT GCGTGTGCACATGCCCACTGTGGGCATCAGCATGGAGTCGAGGCAGGGTCCCTGGGTCCCTGCATATGTC TCAGGCAAGAGCAAGAACAAGGACTGTCTCCCTGCTGCCAGGGGATTGCCACAGCTGGCAACTGAGGCAG GAAAGTTTGGGGGAGGGGATGCAGGCTTAGGGACATCCCAGACCACAGGGAAGGGACACTGTGTTCAGGC CAGGGCACCAGAGGAGACACAAGGACTCACAGCCTCCCCAGCACTGACACCTAAGAGTCAGCCTCAGGAA AATCAGTTCACCAGCCAGGTGAAGGGCTTCTGGCAGAGGCTGTCCCCTGGGAAGAAACACAAAGGACAGG AAAAGTCCCTGGCCAAGGGCTGCTCTCCATTAGCATCTGGGAAGGGCACAAGCCCCATCAAAGGGAGAAG TGAGTTTTGTGGGAACCCTGAAGCTCAGAACTGTGTGAGGGAGCCTGGGATGGTCCTGAGGAAGCAGCTG GGGCACAGGCATGGGACAGTCACCCCCTGCCCCCAGGTCCCTGTGTCTCCCCTCATGGGGTCTGAAGGAG CTCAGCAGGAGGTGCCCCTGCAGGCTCAGGCAGAGCCTGTCCAGAGGCTGCCCCACTTGTGCTGCAGAGG TTCCTGCTCTCCAGTGCCAAGGGCTGAGTCCTGCAGCCCAGGACAGGGACAGACAGCCCCTGAGAGGTGT GGCCCTACAGGAAAAAGCTAA
Translation (1336 aa): MEKILSALNGLSETWLTLGSASYHIDLNYTLLSGLGLLLLYISYLILKLLIHLLGRKKYTPKRQNSIRRK QRKAFKRRKVGPRDPEEGRRLQTVLQSPDKPYDPTGFRQALCPDPRCRVCNKASTQVRHLLSQAPLEDGA ASVSSLPSTAPLIEASLALPPHFPANRPGHPAPETPPHTSRSIHLQNQITPLDGVSSPPISLSASLSPQA AASLNPAVLPAHTPRRTLASFPHLHPNATQEAQLALQAEVPQPPVESPRERSPSVSTAKSTVYEPASSRP QFTAEDQSLTNSTHVINHQPPPSDSYASQGSYQGLTKAYAVEPGDHLSPSPDVLALFTKQEEGDADGTVY KLKREKAVSYIMPSNTSGEISASTAGLENLEVSHLLGNEKGKPEDPHLLQQPSHLKNSEDQSEIKDIQLF WGLPSLHSESLKHEAANTGNSYPGRDYFNKVAQASTGSHSSNLTYSTPLPLPESDQQGQIVPQSQIMPDS LANSKAQPQSLAQLLSPSPQSQLGICGVRFHSLKNEAQPLTPCEIQQLEYNLLQKALQSFLGLPTLTETF QESFCPPPPKISSTRNSSKVHAPKTILPGDFPLSHTLKRKLEHHLRKRLIQRHWGLPHRILESLSFLSPH SEIPEAPKPRDTHGLSRVSLYKFNANTNLPSSGVSQSERSCKKPLESHPPQEKDINVQRHRPGINQRDPI QCKSCGATKSTVHSNSETDPELQLGNMSGNISKASWVRQCQKECEAYLQKHLGKDTKEISGSERPSAVDS SRHSRNMTQPPPETCPRQMEPLACEEDALTRHPHSLAIGPSKEKTLEEHITAFRRRMAFGLPKRVEESLE SDLTKAEPSQPFPQLHIQAHNVSRADPAKSSRSLRRNTTGDRMGTMTSVPTQQSPLPAASLVGHSQPASE NKKVGVDRDLSIAPRDREPTQHWTPRRADKGDVQQSGSHNRPGPELPMSPGGPTHERLASSTNTQGSQEE RRSREDGSEAEGSTELHKGEQLPGLHPQSTKSLKGTQGLCSPGSPVTACQSPQGMSFLHNSESPDSKSQV STEVQLNSEGGTHNQVPDLPATPFAPQEMTSKPQGPSGGDMAVSQVLRVHMPTVGISMESRQGPWVPAYV SGKSKNKDCLPAARGLPQLATEAGKFGGGDAGLGTSQTTGKGHCVQARAPEETQGLTASPALTPKSQPQE NQFTSQVKGFWQRLSPGKKHKGQEKSLAKGCSPLASGKGTSPIKGRSEFCGNPEAQNCVREPGMVLRKQL GHRHGTVTPCPQVPVSPLMGSEGAQQEVPLQAQAEPVQRLPHLCCRGSCSPVPRAESCSPGQGQTAPERC GPTGKS
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