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Report for CCDS38096.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38096.1 Public Mus musculus 2 Asb6 23 108 98 CCDS HistoryNCBI Gene:72323Re-query CCDS DB by CCDS ID:38096.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38096.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041726.3 ENSMUSP00000043462.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041726.3Link to Ensembl Protein Viewer:ENSMUSP00000043462.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000041726Re-query CCDS DB by Protein ID:ENSMUSP00000043462
Original member Current member NCBI NM_133346.2 NP_579924.1 Accepted alive Link to Nucleotide Sequence:NM_133346.2Link to Protein Sequence:NP_579924.1Re-query CCDS DB by Nucleotide ID:NM_133346Re-query CCDS DB by Protein ID:NP_579924Link to BLAST:NP_579924.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_579924.1 418 Q91ZU1 418 100% 0 0

Chromosomal Locations for CCDS 38096.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 30823840 30824504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30824641 30824727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30825452 30825560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30825655 30825761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30826923 30827098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30828074 30828186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1257 nt):
ATGCCGTTCTTGCACGGCTTCCGCAGGATCATCTTTGAGTACCAGCCCCTAGTGGACGCCATCCTTGGCG
CCCTGGGCATCCAGGATCTGGAGCGGCAGGAGCCCCTGGATGATTCTGCTTCCAGCGAGGAGAGCCGGAT
CCTGGTCCTCACGGAGCTGCTGGAGCAGAAGGCTCACTCTCCATTCTACCAGGAAGGCGTGAGCAATGCG
TTGCTGAAGATGGCTGAGCTGGGCCTGACCCGGGCAGCTGCTGTCCTTCTGCAGAGTGGGGCCAACCTCA
ATTTCGAAGACCCTGTTACCTACTACACAGCCCTGCACATTGCTGTCCTGAGAAACCAGCCTGACATGGT
TGAGCTGCTGGTGCGCCACGGGGCTGACATCAACAGGAGGGACCGGATCCATGAGAGCAGCCCCTTGGAT
CTGGCCAGCGAGGAACCCGAACGCCTGCCCTGCCTGCAGCGCCTCTTGGATCTTGGAGCAGATGTCAATG
CAGCTGACAAGAATGGGAAGACAGCTTTACTTCACGCCCTGGCCAGCAGCGATGGTGTGCAGATCCACAA
CACAGAAAACATCCGGCTCCTCCTGGAGGGAGGGGCAGACGTCAAGGCCACCACCAAGGATGGGGACACT
GTATTCACCTGCATCATCTTCCTGCTCGGTGAGACTGTCTGTGGGGACAAGGAGGAGGCCCCGATGATCA
ACCGCTTCTGCTTCCAAGTCACGCAGCTCTTGCTGGCCCACGGTGCCGACCCCAGCGAGTGCCCGGCCCA
TGAGTCCCTCACGCACATCTGCCTCAAGAGCTTCAAGCTGCACTTCCCGCTCCTCTGCTTCCTGCTGGAG
TCCGGAGCCGCCTACAACTGCTCCCTGCACGGTGCATCCTGTTGGTCTGGCTTCAACCTCGTTTTTGAGA
GGCTCTGCTCGCACCCGGGCTGTGCCGAGGACGACAGCCACATTGAGCTTCTGCATAAGGCTGAGACCGT
GCTGGACCTCATGGTGACCAGCTCCCAGAGGCTGCAGCTGCCTGAGAACCTCAACATCCACCCAGTGGGT
AGCCTGGCAGGGAAGATCCAGGCCCTTCATGCCTCCCTGAGGCAGCTCGAGAGCTACCCGCCACCTCTCA
AACACCTGTGCCGGGTGTCCATCCGGCTGTGCCTGCGACCGTGGCCTGTGGACACCAAGGTCAAAGCACT
GCCCTTGCCCGACAGGCTCAAGTGGTACCTGCTCAGTGCACACAGTGATACCCAAGACACTTGCTGA

Translation (418 aa):
MPFLHGFRRIIFEYQPLVDAILGALGIQDLERQEPLDDSASSEESRILVLTELLEQKAHSPFYQEGVSNA
LLKMAELGLTRAAAVLLQSGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLD
LASEEPERLPCLQRLLDLGADVNAADKNGKTALLHALASSDGVQIHNTENIRLLLEGGADVKATTKDGDT
VFTCIIFLLGETVCGDKEEAPMINRFCFQVTQLLLAHGADPSECPAHESLTHICLKSFKLHFPLLCFLLE
SGAAYNCSLHGASCWSGFNLVFERLCSHPGCAEDDSHIELLHKAETVLDLMVTSSQRLQLPENLNIHPVG
SLAGKIQALHASLRQLESYPPPLKHLCRVSIRLCLRPWPVDTKVKALPLPDRLKWYLLSAHSDTQDTC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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