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Report for CCDS23637.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23637.1 Public Mus musculus 9 Klhl40 23 108 98 CCDS HistoryNCBI Gene:72330Re-query CCDS DB by CCDS ID:23637.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23637.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098272.3 ENSMUSP00000095873.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098272.3Link to Ensembl Protein Viewer:ENSMUSP00000095873.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000098272Re-query CCDS DB by Protein ID:ENSMUSP00000095873
Original member Current member NCBI NM_028202.3 NP_082478.1 Accepted alive Link to Nucleotide Sequence:NM_028202.3Link to Protein Sequence:NP_082478.1Re-query CCDS DB by Nucleotide ID:NM_028202Re-query CCDS DB by Protein ID:NP_082478Link to BLAST:NP_082478.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082478.1 621 Q9D783-1 621 99.839% 0 1

Chromosomal Locations for CCDS 23637.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 121777776 121778927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121779923 121780083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121780372 121780479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121780572 121780757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121782530 121782676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121783288 121783399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1866 nt):
ATGACGCTGGGCTTGGAGCAGGCGGAGGAACAGCGTCTGTACCAGCAGACGCTCCTGCAAGACGGCCTCA
AGGACATGCTGGACCACGGCAAGTTCCTAGACTGTGTAGTGCGCGTGGGTGAGCGCGAGTTCCCGTGCCA
CCGCCTGGTGCTAGCCGCCTGTAGCCCCTACTTCCGCGCGCGCTTCCTGGCTGAGCCAGATAGCGCGGGA
GAGGTACGCCTGGAGGAGGTGTCGCCAGACGTAGTGTCCCAGGTGCTGCACTACCTGTACACATCAGAGA
TCGCGCTGGATGAGGCAAGCGTGCAAGACCTGTTTGCCGCGGCGCATCGATTCCAGATCCCGTCCATCTT
CACCATCTGCGTGTCGTTTCTGCAGAAGCGCCTGTGCTTGGCCAATTGCCTGGCTGTCTTCCGCCTCGGC
CTCCTGCTGGACTGCGCGCGTCTGGCTGTGGCCGCGCGCGACTTCATCTGCGCGCGCTTCCCGCTGGTGG
CGCGGGACAACGACTTCCTGGGACTCTCGGCTGACGAGCTGATCGCCATCATCTCCAGCGACGGCCTCAA
CGTAGAGAAGGAGGAGGCAGTGTTTGAGGCTGTGATGCGCTGGGCCAGCAGCGGAGATGCTGAGGCGCAG
GCGGAGCGCCAGCGCGCGCTGCCCACGGTCTTCGAGAGCGTTCGCTGCCGCCTGCTGCCTCGTGCTTTCC
TGGAGACTCGCGTGGAGCGCCACCCACTTGTGCGCTCCCAGCCCGAGCTGTTGCGCAAGGTGCAGATGGT
GAAGGATGCACATGAGGGCCGCCTCACTACACTGCGCAAGAAGAAGAAGGAAAAGGGTGAGCAGACAGCT
CGGGCCAAGGAGGCCAACCAGGGCACAGAAGACACCAAGGCTGAGGACGATGAGGAACGAGTACTGCCCG
GGATCCTCAATGACACTCTGCGCTTCGGCATGTTCCTTCAGGATCTCATCTTCATGATCAGCGAGGAAGG
CGCCGTGGCTTACGACCCAGCCGCCAACGAGTGCTACTGTGCATCCCTGTCCACCCAGATCCCCAAGAAC
CATGTCAGTCTGGTGACCAAGGAGAACCAAGTCTTCGTGGCCGGTGGCCTCTTCTACAATGAGGACAACA
AGGAGGACCCTATGAGTGCTTACTTCCTGCAGTTTGACCACTTGGACTCTGAGTGGCTGGGGATGCCGCC
TCTCCCTTCACCTCGCTGCCTCTTCGGCCTGGGGGAGGCTCTCAACGCCATCTACGTGGTCGGCGGCCGG
GAACTCAAGGACAGCGAAGACAGCCTGGACTCAGTCCTGTGCTACGACAGGCTGTCATTCAAATGGGGTG
AGTCAGACCCGCTGCCCTACGCCGTGTACGGCCACACAGTCCTTTCCCACATGGACCTGGTCTATGTCAT
TGGTGGCAAAGGCAAAGACAGGAAATGTCTGAACAAGATGTGTGTCTACGACCCCAAGAAGTTTGAGTGG
AAGGAGCTAGCACCCATGCAGACAGCCCGATCGCTCTTTGGGGCCACGGTCCATGACGGCCGCATCTTTG
TGGCCGCAGGGGTGACAGACACAGGACTTACCAGCTCTTCAGAGGTGTACAGCATTGCAGACAACAAGTG
GACCTCCTTTGAGGCCTTCCCACAGGAACGAAGCTCGCTCAGCCTGGTCAGCCTAGCTGGCACTCTTTAT
GCCTTGGGTGGCTTTGCCACTCTGGAGACGGAGTCTGGAGAGCTGGTCCCCACGGAGCTCAATGACATCT
GGAGATACAACGAGGATGAGAAAAAGTGGGAGGGGGTCCTACGGGAGATCGCCTACGCAGCTGGCGCCAC
CTTCCTCCCTGTGCGCCTCAATGTGCTTCGCCTGACCAAGATGTGA

Translation (621 aa):
MTLGLEQAEEQRLYQQTLLQDGLKDMLDHGKFLDCVVRVGEREFPCHRLVLAACSPYFRARFLAEPDSAG
EVRLEEVSPDVVSQVLHYLYTSEIALDEASVQDLFAAAHRFQIPSIFTICVSFLQKRLCLANCLAVFRLG
LLLDCARLAVAARDFICARFPLVARDNDFLGLSADELIAIISSDGLNVEKEEAVFEAVMRWASSGDAEAQ
AERQRALPTVFESVRCRLLPRAFLETRVERHPLVRSQPELLRKVQMVKDAHEGRLTTLRKKKKEKGEQTA
RAKEANQGTEDTKAEDDEERVLPGILNDTLRFGMFLQDLIFMISEEGAVAYDPAANECYCASLSTQIPKN
HVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNAIYVVGGR
ELKDSEDSLDSVLCYDRLSFKWGESDPLPYAVYGHTVLSHMDLVYVIGGKGKDRKCLNKMCVYDPKKFEW
KELAPMQTARSLFGATVHDGRIFVAAGVTDTGLTSSSEVYSIADNKWTSFEAFPQERSSLSLVSLAGTLY
ALGGFATLETESGELVPTELNDIWRYNEDEKKWEGVLREIAYAAGATFLPVRLNVLRLTKM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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