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Report for CCDS26056.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26056.1 Public Mus musculus 12 Zc2hc1c 23 108 98 CCDS HistoryNCBI Gene:72350Re-query CCDS DB by CCDS ID:26056.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26056.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059341.4 ENSMUSP00000051664.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059341.4Link to Ensembl Protein Viewer:ENSMUSP00000051664.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000059341Re-query CCDS DB by Protein ID:ENSMUSP00000051664
Original member Current member NCBI NM_172414.4 NP_766002.2 Accepted alive Link to Nucleotide Sequence:NM_172414.4Link to Protein Sequence:NP_766002.2Re-query CCDS DB by Nucleotide ID:NM_172414Re-query CCDS DB by Protein ID:NP_766002Link to BLAST:NP_766002.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766002.2 527 Q8CCG1 527 100% 0 0

Chromosomal Locations for CCDS 26056.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 85289571 85290881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85296402 85296674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1584 nt):
ATGGCTGGTCTCCAGTTGGCTCCACATCTGCCTGTGGGCGTTATGTTCCCACATAATAAAACAGAAGCTC
CTGGACTCCACTCAGCTAAGCACGACCCTTACGAACAAAGTGACTCTTCCCAGCGGCCCTCGATGGGACA
TTTGAGGAATAGTTTCCAGTCGAAGCTTTGGAGCAACACAGAAATGGAGCAGGAGGACGAGGTCTCCACC
CGCCCCAAAAGGAACGTCTGCACAAAAGCCCGGAGGCACTCCTGTCCCCACAGTGCAGGAATCAGGCAGC
AAGGCTCAGGGAACAATGCCCAGGGCCAAGGAAAGGGTCTGTTTTACTTGTCTAGTCCGACACCCCGGTA
TCCCAAAGCAAATGACCAGGACTTCATTCCCTTTAGGAGGAAACGAGTGGGAGTGGATCGGGCTTACCCA
CTGAAACCCATGGTCCACCGGAAGTCACATAGTACAAGTGATGCGGGCGCAGACGGGGACCAGAATGGCT
ACCCAAGACTCCCTGACTCAAGTGAGTTTTCAGACAACAGCTTTGGTTTAAGGAGCTGGGTGAATTCATC
TCTTCTTGCCTCTGTGCAGGCAGAGAAGGTCGTGGCGGAGCTCCATAGGACCGAGTGGACCCAGATCCAA
AGGCTCGAAGCTGCAGGGGAGAGTTTACAGAAGGAGATCCGCAGAAAGGAGATTCTCCTACAAGAAAAGC
TGAAGAAGACAGAGGAGGGTCTTCGAAGGATGCAGAAGGAAAAGAAACAGGCCATTTTCCAGGAAGACAG
AGAGCTACAAAGGATGGTACTACCTAGAAGGAGGGTTCGAGATGGTGACCATGACACCCCACACAAACCC
TGCTTGTCCCCAGAGTTCAGGTCTGAGGTATTCAGTAGAAACAGGGGAGAGGATCAAACTTGTGATCAGG
CTCAGGAAAACCCTAGTCCACGCCAGCTCTCTGATTATGAACTCCAAAAGCTCAAAAGGGAAAGACTGAT
GGCCAGTAACAGTAAAATCCGAGATCAAGACGCAGGACCCTCAGCAGACGCGTTCTTTCAACCGGCAGAG
GAGCTGGGCAGTACACTGCAGGAGTCAAGTCGGTCCGGGACACCAGGCTCCTCTGGGTCCAGCTCCTCCA
CAGAAGAGCCAGAGCTGGCCAAGTGCAGCCACTGTGGACGATCGTTTCTTTCCCTCAGGCTGCAGAGACA
CTCCACCGTCTGTGGCAAGATGCAAGGGTCCAAAAGAAAAGTGTTTGACTCTTCCAGGGCCCGGGCGAAG
GGCACAGAACTAGAGCAGTACTTGAACTGGAGGGGACCAGCCACAGCCAAGGCTGAAACTCCGCCTCCCC
CTCGGAAGAGCACCTGGAGACAGAAGCACGAGTCTTTTATCCGTACCCTCCGGCATGCGCGACAGGTCCA
GCAGGTAATCGCCAGAGGTGGCAATCCCTCAGACTTGCCTTCCATCCTGCCTGCAGACAACCCAGACTAT
GTTCAGTGTCCTCACTGCAGCCGCCACTTTGCTCCCAAGGTGGCTGAACGCCACATACCTAAGTGTAAGA
CCATCAAGAACCGACCACCGCCGCCAAGGAGGCACGACAGCTGA

Translation (527 aa):
MAGLQLAPHLPVGVMFPHNKTEAPGLHSAKHDPYEQSDSSQRPSMGHLRNSFQSKLWSNTEMEQEDEVST
RPKRNVCTKARRHSCPHSAGIRQQGSGNNAQGQGKGLFYLSSPTPRYPKANDQDFIPFRRKRVGVDRAYP
LKPMVHRKSHSTSDAGADGDQNGYPRLPDSSEFSDNSFGLRSWVNSSLLASVQAEKVVAELHRTEWTQIQ
RLEAAGESLQKEIRRKEILLQEKLKKTEEGLRRMQKEKKQAIFQEDRELQRMVLPRRRVRDGDHDTPHKP
CLSPEFRSEVFSRNRGEDQTCDQAQENPSPRQLSDYELQKLKRERLMASNSKIRDQDAGPSADAFFQPAE
ELGSTLQESSRSGTPGSSGSSSSTEEPELAKCSHCGRSFLSLRLQRHSTVCGKMQGSKRKVFDSSRARAK
GTELEQYLNWRGPATAKAETPPPPRKSTWRQKHESFIRTLRHARQVQQVIARGGNPSDLPSILPADNPDY
VQCPHCSRHFAPKVAERHIPKCKTIKNRPPPPRRHDS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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