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Report for CCDS17981.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17981.1 Public Mus musculus 4 Pip4p2 23 108 98 CCDS HistoryNCBI Gene:72519Re-query CCDS DB by CCDS ID:17981.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17981.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029875.3 ENSMUSP00000029875.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029875.3Link to Ensembl Protein Viewer:ENSMUSP00000029875.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000029875Re-query CCDS DB by Protein ID:ENSMUSP00000029875
Original member NCBI NM_028264.4 NP_082540.1 Updated not alive Link to Nucleotide Sequence:NM_028264.4Link to Protein Sequence:NP_082540.1Re-query CCDS DB by Nucleotide ID:NM_028264Re-query CCDS DB by Protein ID:NP_082540
Current member NCBI NM_028264.5 NP_082540.1 Accepted alive Link to Nucleotide Sequence:NM_028264.5Link to Protein Sequence:NP_082540.1Re-query CCDS DB by Nucleotide ID:NM_028264Re-query CCDS DB by Protein ID:NP_082540Link to BLAST:NP_082540.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082540.1 257 Q9CZX7 257 100% 0 0

Chromosomal Locations for CCDS 17981.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 14864332 14864437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14886534 14886682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14892393 14892499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14893501 14893624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14902487 14902539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14912432 14912522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14913724 14913867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGGCTGCTGACGGGGTGGACGAACGTTCGCCTCTGCTGTCAGCATCCCATTCGGGAAATGTCACTCCCA
CAGCCCCGCCGTACTTGCAGGAAAGCAGCCCCAGAGCTGAACTCCCACCTCCGTATACAGCCATCGCCAG
TCCAGGAACAAGTGGTATTCCCGTGATCAACTGTCGTGTGTGCCAATCTCTAATCAACCTGGATGGTAAA
CTTCACCAGCATGTGGTTAAGTGCACAGTTTGCAATGAAGCTACGCCAATCAAAACCCCCCCAACAGGGA
AGAAATATGTTAGATGCCCTTGTAATTGTCTACTCATTTGTAAGGATACATCTCGGCGAATAGGATGTCC
GAGACCCAACTGTCGACGCATAATTAACCTTGGCCCCGTAATGCTCATTTCTGAAGAGCAACCAGCCCAA
CCTGCATTGCCGATCCAGCCAGAAGGCACAAGGGTAGTGTGCGGGCACTGCGGGAACACATTCCTGTGGA
TGGAACTGAGGTTCAACACTCTGGCAAAATGCCCACACTGCAAAAAAATCTCCTCGGTAGGTAGCGCCCT
TCCCCGGAGACGCTGCTGTGCGTATGTCACCATCGGAATGATATGTATTTTCATTGCAGTTGGATTAACT
GTTGGCACACAAGATTTTTCAAGGCGATTTCATGCAACCTATGTGTCTTGGGCAATTGCTTATCTGCTAG
GTTTGATTTGCCTTATCCGAGCTTGTTACTGGGGCGCAATCAGAGTCAGTTATCCAGAGCACGGCTTTGC
TTAA

Translation (257 aa):
MAADGVDERSPLLSASHSGNVTPTAPPYLQESSPRAELPPPYTAIASPGTSGIPVINCRVCQSLINLDGK
LHQHVVKCTVCNEATPIKTPPTGKKYVRCPCNCLLICKDTSRRIGCPRPNCRRIINLGPVMLISEEQPAQ
PALPIQPEGTRVVCGHCGNTFLWMELRFNTLAKCPHCKKISSVGSALPRRRCCAYVTIGMICIFIAVGLT
VGTQDFSRRFHATYVSWAIAYLLGLICLIRACYWGAIRVSYPEHGFA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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