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Report for CCDS27928.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27928.1 Public Mus musculus 16 Anks3 23 108 98 CCDS HistoryNCBI Gene:72615Re-query CCDS DB by CCDS ID:27928.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27928.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023157.5 ENSMUSP00000023157.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023157.5Link to Ensembl Protein Viewer:ENSMUSP00000023157.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000023157Re-query CCDS DB by Protein ID:ENSMUSP00000023157
Original member NCBI NM_028301.4 NP_082577.2 Updated not alive Link to Nucleotide Sequence:NM_028301.4Link to Protein Sequence:NP_082577.2Re-query CCDS DB by Nucleotide ID:NM_028301Re-query CCDS DB by Protein ID:NP_082577
Current member NCBI NM_028301.5 NP_082577.2 Accepted alive Link to Nucleotide Sequence:NM_028301.5Link to Protein Sequence:NP_082577.2Re-query CCDS DB by Nucleotide ID:NM_028301Re-query CCDS DB by Protein ID:NP_082577Link to BLAST:NP_082577.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082577.2 655 Q9CZK6 655 100% 0 0

Chromosomal Locations for CCDS 27928.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 4941911 4941987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4942211 4942294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4942693 4942778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4943079 4943251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4943559 4943700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4946055 4946179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4947265 4947432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4947649 4947758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4948226 4948363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4950613 4950768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4953819 4953954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4955858 4955939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4957641 4957762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4957968 4958166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4960397 4960566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1968 nt):
ATGTCTGAGCTCAGCGATGAAGCCAGCGAGCCGGAGCTCCTGAAGCGCAGCCTGTCCATGTGGCACGGGC
TTGGTGCCCAGGGCAGCCCAGAGGAGCTGGATGTCCCCTTGGATCTTCACACAGCTGCCTCCATTGGCCA
GCATGAGGTGGTGAAGGAGTGTGTGCAGCGGGGAGAGTTAGATTTGAATAAGAAGAATGGTGGTGGTTGG
ACAGCGCTGATGTATGCCTCCTACATTGGACACGATACCATTGTTCACTTGCTGCTTGAGGCAGGCGTGA
GTGTGAATGTGCCAACCCCGGAAGGACAGACTCCACTGATGCTGGCCTCCAGCTGTGGCAACGAAAGCAT
TGCCTACTTTCTGCTCCAGCAAGGTGCAGAGCTTGAGATGAAAGACATCCATGGCTGGACTGCACTCTTC
CACTGTACCAGTGCCGGCCACCAACAGATGGTCAAATTTCTTCTGGAGAGTGGAGCCAATGCCAACGTGA
GGGAGCCTGTATATGGATACACTCCTTTGATGGAAGCAGCTGCCTCTGGCCATGAGATAATTGTGCAGTA
TTTTCTGAATCACGGAGTCAAAGTGGACACAAGAGACCACAGTGGAGCGACAGCCTGCATGTTAGCCAGG
CAGTTTGGTCACATGAAGATTGTAGCCTTGATGGAAACTCACTCACCTGTACTGCCCAAGAGCCTCTACC
GTAGCCCAGAAAAATATGAAGATCTGAGCTCTTCAGATGAGTCCTGGCCTGTTCCTCAGCGCCAGAGGCC
CTGCCGAAAAAAGGGCCTCAGTATCCATGAGGGGCCGCGTGCCCTGGCCAAGATCACAGCTATTGGACTC
GGAGGGAAGACTCAGACCACCTATGAGCAAGTCCCTCCACGGGGCTACGTGACCTTCACCAGCAGTGATG
AGAATACCATGGAAAGCGAGGGCCTCTGCTACAGAGACGTCACTTCCCCCATCAATGAACAGGATGTGGA
GAGCAGTAGCAGCAGCAGCCGGGAGGAACCCACTTTCTGTGCCAGTCTTGGGCCTGTGTGGAGGAGCAGC
AGCAGTGATGGCCTAGCAAGAGCCCAGGGTCTCAGCAGTGAAGCCTCCATAGAAAGCAATGAGGATTCTG
ATCATGCCCGGAAAAGCTCGGTTCGAAAACAAACCAGGAGTTATTTGAAGAATAAGAGTCGTCACGGCAA
CAGTGATGGTCATTGGCCTTCCAGCACAGGGCCTGCTTCCATTCCAGGGTCTGAACCCCAAACTGAGAAG
TCTCCTTACTCAGGACCCCAGGACCTTGCCACACTGCTGGAACAGATCGGGTGTCTGAAGTACCTGCAAG
TGTTCGAGGAGCAGGACATAGACCTGCGTATCTTTCTGACTCTCACTGAAAGCGATTTGAAGGAAATTGG
CATCACGTTGTTTGGGCCCAAAAGGAAAATGACCTCTGCCATTGCCCGCTGGCACAGCAGTGCCCGCCCA
CCTAGTGATGCCCTAGAGCTGGCCTATGCTGACCGGCTGGAGACTGAGATGCAGGAGCTTGCCATTCAGT
TGCATAAATGCTGTGAGGAGGCAGAGGCTCTGCGTGGCCAGGTATCCCAGGAGCAGGAATTGCGGGCTGT
AGTAGAGAGCTGCCTCCTGGAGCAGGATAGTGCCCGAAAGGACATCCATGCCCAGCTGCAGGAGGCCCAA
ACCCTGGCCCAGGATGCTGCCCTTGTCCTGGACCAGCTGCGGGCCTGTCAAGCTGAGCTGTCAGCTCGAT
TGCGGCAGCACCACTCCCCCAGGGAAGGTACTCCAAACCCACACTTTCTCTCAGCAGATTCCAAAGGCTG
GCCCATTCCCCTGCAGGCCTTGAGCCTCCCTGAGTTGTCAGGAGCCCTGGAAGACCGTGTCCATGAGATG
GGGCAGGCGTTATGCTCTGTAACACAGAGCTTGGAGAAACTACAGATGCTGAATGCAAAGAAATGGCGGG
AACCGTAG

Translation (655 aa):
MSELSDEASEPELLKRSLSMWHGLGAQGSPEELDVPLDLHTAASIGQHEVVKECVQRGELDLNKKNGGGW
TALMYASYIGHDTIVHLLLEAGVSVNVPTPEGQTPLMLASSCGNESIAYFLLQQGAELEMKDIHGWTALF
HCTSAGHQQMVKFLLESGANANVREPVYGYTPLMEAAASGHEIIVQYFLNHGVKVDTRDHSGATACMLAR
QFGHMKIVALMETHSPVLPKSLYRSPEKYEDLSSSDESWPVPQRQRPCRKKGLSIHEGPRALAKITAIGL
GGKTQTTYEQVPPRGYVTFTSSDENTMESEGLCYRDVTSPINEQDVESSSSSSREEPTFCASLGPVWRSS
SSDGLARAQGLSSEASIESNEDSDHARKSSVRKQTRSYLKNKSRHGNSDGHWPSSTGPASIPGSEPQTEK
SPYSGPQDLATLLEQIGCLKYLQVFEEQDIDLRIFLTLTESDLKEIGITLFGPKRKMTSAIARWHSSARP
PSDALELAYADRLETEMQELAIQLHKCCEEAEALRGQVSQEQELRAVVESCLLEQDSARKDIHAQLQEAQ
TLAQDAALVLDQLRACQAELSARLRQHHSPREGTPNPHFLSADSKGWPIPLQALSLPELSGALEDRVHEM
GQALCSVTQSLEKLQMLNAKKWREP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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