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Report for CCDS27580.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27580.2 Public Mus musculus 15 Tonsl 23 108 98 CCDS HistoryNCBI Gene:72749Re-query CCDS DB by CCDS ID:27580.2See the combined annotation on chromosome 15 in Sequence Viewer

Public Note for CCDS 27580.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 27580.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168185.7 ENSMUSP00000129597.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168185.7Link to Ensembl Protein Viewer:ENSMUSP00000129597.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168185Re-query CCDS DB by Protein ID:ENSMUSP00000129597
Original member Current member NCBI NM_183091.3 NP_898914.3 Accepted alive Link to Nucleotide Sequence:NM_183091.3Link to Protein Sequence:NP_898914.3Re-query CCDS DB by Nucleotide ID:NM_183091Re-query CCDS DB by Protein ID:NP_898914Link to BLAST:NP_898914.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_898914.3 1363 Q6NZL6 1363 99.9266% 0 1

Chromosomal Locations for CCDS 27580.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 76626301 76626482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76628749 76628882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76629257 76629330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76629666 76629841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76630477 76630648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76630831 76631132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76631794 76631872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76631961 76632111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76632607 76632683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76632773 76633503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76633586 76633709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76633791 76633954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76634045 76634117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76634565 76634654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76634769 76634851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76636116 76636305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76636562 76636687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76636941 76637093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76637180 76637325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76637852 76637966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76638042 76638213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76638472 76638601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76638840 76639023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76639448 76639590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76639678 76639773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76639854 76639878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4092 nt):
ATGACCCTGGAACAGGAGCTTCGCCAGCTGAGCAAGGCCAAGACCAGGGCCCAGAGGAATGGACAGCTGC
GCGAGGAGGCGGCCTACTGCCACCAGCTGGGGGAGCTGCTGGCTAGCCACGGCCGCTTCAAGGACGCTTT
GGAGGAGCACCAGCAGGAACTACATCTGCTAGAGAGCGTCCAGGACACTCTAGGCTGCGCTGTGGCCCAC
CGCAAGATTGGAGAACGGCTGGCTGAAATGGAGAATTACTCTGCTGCTCTGAAGCACCAGCATCTCTACC
TGGATCTGGCTGGTTCCCTGTCCAACCACACTGAACTACAGCGAGCCTGGGCCACCATTGGCCGCACCCA
TCTGGATATATATGACCACTGCCAATCAAGAGATTCCTTGTTGCAGGCACAAGCTGCCTTTGAGAAGAGC
TTGGCTATTGTGGATGAGAAACTAGAGGGGATGCTGACCCAGCGGGAACTGAGTGAGATGAGGACCCGTC
TCTACCTCAATCTGGGTCTCACCTGTGAGAGCCTGCAACAGACAGCCCTGTGCAACAACTACTTCAAAAA
GAGCATCTTTCTTGCTGAGCAGAACCATCTCTATGAAGATCTGTTCCGGGCCCGATACAACCTGGGTGCC
ATCCACTGGCGCGGAGGGCAGCACTCTCAGGCCATGCGCTGCTTAGAAGGGGCCCGGGAATGTGCCCGTG
CTATGAAGATGAGATTCATGGAGAGTGAATGTTGCGTGCTAGTGTCCCAGGTGCTCCAAGATCTGGGGGA
CTTCTTAGCTGCCAAACGAGCCCTGAAGAAGGCCTATAGGTTGGGCTCTCAGAAGCCTAACCAGAGAGTG
ACTGTCTGTCAGAGTCTCAAGTATGTATTGGCAGTGATCCAGCTGCAGCAGCAGCTGGAAGAGGCTGAGG
GCAATGATCTTCAAGGTGCCATGGCTATCTGTGAACAGTTGGGGGACCTGTTCTCCAAAGCGGGTGACTT
TCCCAAGGCAGCTGAGGCTTACCAGAAGCAGCTGCACTTGGCTGAGCTGCTGAACAGACCAGATCTGGAG
CTGGCTGTTATCCACGTATCCCTGGCCACCACACTGGGAGACATGAAGGATCACCGCAAGGCTGTGCACC
ACTATGAGGAAGAACTGAGGCTGCGCAAGGGCAACGCTCTGGAGGAAGCTAAGACTTGGTTCAACATTGC
CCTGTCACGTGAGGAGGCTGGAGACGCATACGAGCTGCTAGCTCCATGCTTCCAGAAGGCTTTTTGCTGT
GCCCAGCAGGCCCAGAGATTCCAGCTGCAGAGGCAGATCTTACAGCACCTTTATACCGTGCAACTAAAGT
TGCAGCCACAAGAAGCCCGTGACACTGAAATCAGACTGCAGGAACTGAGTATGGCAAAAGACACAGAAGA
AGAGGAGGAGGAAGAGGAGGAAGAAGAGGAAGAAGCCAGTGAGGCCCCAGAGACCAGTGAACTGGAACTC
TCAGAGAGCGAGGATGATGCTGACGGCCTGTCTCAGCAGCTGGAAGAAGATGAGGAGCTTCAGGGCTGTG
TGGGCCGGCGGAAGGTGAACAAGTGGAACCGGCGCAATGACATGGGAGAGACCCTGCTGCACCGAGCTTG
CATTGAAGGCCAACTGCGTCGTGTCCAGGATCTTGTGAAGCAGGGCCATCCCCTGAATCCCCGAGACTAC
TGCGGCTGGACACCTCTCCATGAAGCATGCAACTATGGACATCTTGAGATTGTTCGCTTCCTTCTGGACC
ATGGAGCAGCAGTGGATGACCCAGGTGGCCAGGGGTGTGATGGCATCACCCCCCTGCATGACGCCCTCAA
CTGTGGCCACTTTGAGGTAGCTGAATTACTCATTGAGCGAGGGGCATCCGTGACTCTCCGTACCAGGAAG
GGCCTCAGCCCACTGGAGACACTGCAGCAGTGGGTGAAGTTGTACTTCAGGGACCTTGACCTTGAGACAA
GACAGAAGGCGGCAACCATGGAGAAGAGGCTCCAGATGGCCTCCTCAGGCCAAGCTTCCCGCAGCTCCCC
TGCCCTCCAGACCATTCCAAGTAACCATCTATTTGACCCTGAGACCTCTCCTCCCTCAAGCCCCTGTCCA
GAACCCTCCTCATATACTCCTAGACCTCCAGAGGCCTCTCCGGCCCCTGCTAAAGTCTTTCTGGAGGAAA
CTGTGTCTGCCGTGTCCCGACCTCGAAAGACCAGGCACAGACCAACCAGCAGCAGTAGCAGCTCAGAGGA
TGAGGATAACCCAAGTCCCTGCAGGCCATCGCAGAAAAGACTGAGACATACCACACAGCAGGGTGAAGTC
AAGATTCCTGACCCACCCAAAAGTAGAGAGACAGCCACGTCAAGTGCTTGCCGGGCGGCTTACCAAGCGG
CCATCCGAGGCGTGGGTAGTGCCCAGAGCCGTCGCTTGGTGCCTAGCCTGCCTCGGGGCTCAGAGGAAGT
CCCTGCCCCCAAGACAGCACTCATTCCCGAGGAGGAATACCTGGCTGGGGAATGGCTGGAGGTAGATACA
CCTCTGACCCGCAGCGGCAGGCCCAGCACCTCGGTGTCAGACTATGAGCGATGTCCTGCAAGGCCCCGGA
CCCGTGTCAAGCAGAGTCGCCTGACAAGTCTTGATGGTTGGTGTGCACGGACTCAAGCAGGAGATGGCAG
CTTGAATGCAGAGCCTGCAGAGAACCCCAGCGTGCCTAGGACCTCAGGACCCAACAAGGAAAATTATGCA
GCAGGCCAGCCTTTGCTTCTGGTCCAGCCCCCTCCCATCCGGGTTCGAGTTCAAATTCAGGATAACCTTT
TCCTCATCCCCGTTCCCCAGAGTGACATCCGCCCCGTGGCTTGGCTCACAGAGCAAGCCGCCCAGCGCTA
TTTCCAAACGTGTGGGCTGCTCCCAAGGCTCACCCTGCGGAAGGATGGCGCACTGCTGGCCCCGCAGGAC
CCCATCCCTGACGTGCTGCAGAGCAACGATGAGGTGTTAGCTGAGGTAACTTCGTGGGACCTTCCTCCGC
TAAAGGACCGCTACCGCAGGGCCTGCCTGAGCCTGGGGCAAGGGGAGCACCAGCAAGTGCTGCATGCCAT
GGACCACCAGAGTTCCAGCCCTTCGTTCAGTGCCTGCTCCCTAGCCTTGTGCCAAGCCCAGCTCACACCC
CTGCTGAGGGCCCTCAAGTTACACACAGCACTCCGGGAGCTACGCCTTGCAGGGAACCGACTAGGTGATG
CCTGCGCTACCGAGCTGCTGGCCACCCTGGGCACCACGCCTAACCTGGTCCTCCTCGATCTCTCTTCCAA
TCACTTGGGCCAGGAAGGTCTGCGTCAGCTTGTGGAAGGCTCCTCGGGCCAGGCTGCTTTGCAGAACTTG
GAGGAGCTGGACTTGAGTATGAACCCACTAGGAGATGGCTGTGGTCAGGCCCTGGCCTCCCTTCTGCGGG
CCTGCCCCATGCTCAGCACCCTGCGCCTACAGGCCTGTGGCTTCAGCTCCAGTTTCTTCCTGAGCCACCA
GGCTGCCCTGGGCGGTGCCTTCCAAGATGCTGTGCACCTGAAAACCTTGTCCTTATCGTACAATCTGCTC
GGCGCTCCTGCCCTGGCGAGGGTGCTGCAGACCTTACCCGCCTGTACCCTCAAACGTCTGGACCTAAGCT
CTGTGGCAGCCAGCAAGAGCAACTCGGGTATCATAGAGCCTGTTATCAAATACTTGACCAAGGAAGGCTG
TGCTCTGGCCCACCTAACCCTGTCCGCAAACTGCCTGGGTGACAAGGCCGTGAGAGAACTGAGCAGATGT
CTCCCTTGCTGCCCCTCACTCACCTCTCTGGACCTGTCTGCCAACCCCGAGGTCAGCTGTGCCAGTCTAG
AGGAGCTCTTGTCTGCCCTCCAAGAGCGGTCCCAAGGCCTCAGCTTCCTTGGCCTATCAGGCTGCTCTAT
TCAAGGGCCGCTGAACTCTGACCTCTGGGACAAGATCTTCGTGCAGTTGCAGGAGTTGCAACTGTGCACC
AAAGACCTGAGCACCAAAGACCGAGACTCGGTGTGTCAGAGACTGCCAGAGGGTGCGTGCACAATGGACC
AAAGTTCCAAGCTCTTCTTTAAATGCCTCTGA

Translation (1363 aa):
MTLEQELRQLSKAKTRAQRNGQLREEAAYCHQLGELLASHGRFKDALEEHQQELHLLESVQDTLGCAVAH
RKIGERLAEMENYSAALKHQHLYLDLAGSLSNHTELQRAWATIGRTHLDIYDHCQSRDSLLQAQAAFEKS
LAIVDEKLEGMLTQRELSEMRTRLYLNLGLTCESLQQTALCNNYFKKSIFLAEQNHLYEDLFRARYNLGA
IHWRGGQHSQAMRCLEGARECARAMKMRFMESECCVLVSQVLQDLGDFLAAKRALKKAYRLGSQKPNQRV
TVCQSLKYVLAVIQLQQQLEEAEGNDLQGAMAICEQLGDLFSKAGDFPKAAEAYQKQLHLAELLNRPDLE
LAVIHVSLATTLGDMKDHRKAVHHYEEELRLRKGNALEEAKTWFNIALSREEAGDAYELLAPCFQKAFCC
AQQAQRFQLQRQILQHLYTVQLKLQPQEARDTEIRLQELSMAKDTEEEEEEEEEEEEEASEAPETSELEL
SESEDDADGLSQQLEEDEELQGCVGRRKVNKWNRRNDMGETLLHRACIEGQLRRVQDLVKQGHPLNPRDY
CGWTPLHEACNYGHLEIVRFLLDHGAAVDDPGGQGCDGITPLHDALNCGHFEVAELLIERGASVTLRTRK
GLSPLETLQQWVKLYFRDLDLETRQKAATMEKRLQMASSGQASRSSPALQTIPSNHLFDPETSPPSSPCP
EPSSYTPRPPEASPAPAKVFLEETVSAVSRPRKTRHRPTSSSSSSEDEDNPSPCRPSQKRLRHTTQQGEV
KIPDPPKSRETATSSACRAAYQAAIRGVGSAQSRRLVPSLPRGSEEVPAPKTALIPEEEYLAGEWLEVDT
PLTRSGRPSTSVSDYERCPARPRTRVKQSRLTSLDGWCARTQAGDGSLNAEPAENPSVPRTSGPNKENYA
AGQPLLLVQPPPIRVRVQIQDNLFLIPVPQSDIRPVAWLTEQAAQRYFQTCGLLPRLTLRKDGALLAPQD
PIPDVLQSNDEVLAEVTSWDLPPLKDRYRRACLSLGQGEHQQVLHAMDHQSSSPSFSACSLALCQAQLTP
LLRALKLHTALRELRLAGNRLGDACATELLATLGTTPNLVLLDLSSNHLGQEGLRQLVEGSSGQAALQNL
EELDLSMNPLGDGCGQALASLLRACPMLSTLRLQACGFSSSFFLSHQAALGGAFQDAVHLKTLSLSYNLL
GAPALARVLQTLPACTLKRLDLSSVAASKSNSGIIEPVIKYLTKEGCALAHLTLSANCLGDKAVRELSRC
LPCCPSLTSLDLSANPEVSCASLEELLSALQERSQGLSFLGLSGCSIQGPLNSDLWDKIFVQLQELQLCT
KDLSTKDRDSVCQRLPEGACTMDQSSKLFFKCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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