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Report for CCDS45567.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45567.1 Public Homo sapiens 17 TLCD2 24 110 108 CCDS HistoryNCBI Gene:727910Re-query CCDS DB by CCDS ID:45567.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45567.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000330676.8 ENSP00000331965.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000330676.8Link to Ensembl Protein Viewer:ENSP00000331965.6Re-query CCDS DB by Nucleotide ID:ENST00000330676Re-query CCDS DB by Protein ID:ENSP00000331965
Original member Current member NCBI NM_001164407.2 NP_001157879.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001164407.2Link to Protein Sequence:NP_001157879.1Re-query CCDS DB by Nucleotide ID:NM_001164407Re-query CCDS DB by Protein ID:NP_001157879Link to BLAST:NP_001157879.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157879.1 264 A6NGC4 264 100% 0 0

Chromosomal Locations for CCDS 45567.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 1707770 1708222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1709499 1709581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1709804 1709886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1710067 1710242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (795 nt):
ATGGCGCCCACGGGGCTCCTGGTGGCCGGCGCCTCCTTCCTCGCGTTCCGGGGGCTGCACTGGGGGTTGC
GGCGGCTGCCCACGCCGGAATCGGCCGCTCGGGACCGCTGGCAGTGGTGGAACCTCTGCGTCTCCCTGGC
GCACAGCCTGCTCTCGGGGACCGGGGCGCTGCTCGGCCTGTCACTGTACCCTCAGATGGCCGCCGACCCC
ATCCATGGCCACCCGCGCTGGGCTCTGGTGCTGGTGGCTGTGTCTGTGGGTTACTTCCTGGCAGACGGAG
CTGACCTGCTGTGGAACCAGACCTTGGGCAAGACCTGGGATCTTCTCTGTCATCATTTGGTGGTGGTGAG
CTGCCTCAGCACCGCTGTTCTGTCTGGCCACTACGTGGGCTTCTCCATGGTGTCTCTGCTCCTGGAACTG
AACTCTGCCTGCTTGCACCTGCGGAAGCTGCTGTTGCTTTCTCGCCAGGCCCCATCCCTGGCCTTCAGCG
TGACCAGCTGGGCCTCCTTGGCCACCTTGGCCCTCTTCCGCCTGGTCCCGCTGGGGTGGATGAGTCTGTG
GCTGTTCCGGCAGCACCACCAGGTTCCTCTTGCTCTGGTCACCCTGGGTGGAATTGGGCTGGTCACTGTG
GGCATCATGAGCATCATATTGGGGATCCGTATTCTGGTCAATGATGTCCTACAGTCTCGACCCCATCCAC
CCAGCCCTGGCCATGAGAAAACCAGGGGGACCAGGACACGTCGTGACAATGGACCTGTCACCAGCAACAG
TTCGACTCTCAGCCTGAAAGACTAG

Translation (264 aa):
MAPTGLLVAGASFLAFRGLHWGLRRLPTPESAARDRWQWWNLCVSLAHSLLSGTGALLGLSLYPQMAADP
IHGHPRWALVLVAVSVGYFLADGADLLWNQTLGKTWDLLCHHLVVVSCLSTAVLSGHYVGFSMVSLLLEL
NSACLHLRKLLLLSRQAPSLAFSVTSWASLATLALFRLVPLGWMSLWLFRQHHQVPLALVTLGGIGLVTV
GIMSIILGIRILVNDVLQSRPHPPSPGHEKTRGTRTRRDNGPVTSNSSTLSLKD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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