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Report for CCDS45653.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45653.1 Public Homo sapiens 17 TBC1D3H 24 110 108 CCDS HistoryNCBI Gene:729877Re-query CCDS DB by CCDS ID:45653.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45653.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000610350.4 ENSP00000482630.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000610350.4Link to Ensembl Protein Viewer:ENSP00000482630.1Re-query CCDS DB by Nucleotide ID:ENST00000610350Re-query CCDS DB by Protein ID:ENSP00000482630
Original member Current member NCBI NM_001123392.4 NP_001116864.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001123392.4Link to Protein Sequence:NP_001116864.3Re-query CCDS DB by Nucleotide ID:NM_001123392Re-query CCDS DB by Protein ID:NP_001116864Link to BLAST:NP_001116864.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116864.3 549 P0C7X1 549 100% 0 0

Chromosomal Locations for CCDS 45653.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 36377846 36378414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36379396 36379548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36379919 36380018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36380482 36380547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36380932 36381026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36381740 36381860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36382404 36382452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36383701 36383810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36384140 36384247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36384691 36384771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36385254 36385293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36386576 36386661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36386824 36386895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1650 nt):
ATGGACGTGGTAGAGGTCGCGGGCAGTTGGTGGGCACAAGAGCGAGAGGACATCATTATGAAATACGAAA
AGGGACACCGAGCTGGGCTGCCAGAGGACAAGGGGCCTAAGCCTTTTCGAAGCTACAACAACAACGTCGA
TCATTTGGGGATTGTACATGAGACGGAGCTGCCTCCTCTGACTGCGCGGGAGGCGAAGCAAATTCGGCGG
GAGATCAGCCGAAAGAGCAAGTGGGTGGATATGCTGGGAGACTGGGAGAAATACAAAAGCAGCAGAAAGC
TCATAGATCGAGCGTACAAGGGAATGCCCATGAACATCCGGGGCCCGATGTGGTCAGTCCTCCTGAACAC
TGAGGAAATGAAGTTGAAAAACCCCGGAAGATACCAGATCATGAAGGAGAAGGGCAAGAGGTCATCTGAG
CACATCCAGCGCATCGACCGGGACATAAGCGGGACATTAAGGAAGCATATGTTCTTCAGGGATCGATACG
GAACCAAGCAGCGGGAACTACTCCACATCCTCCTGGCATATGAGGAGTATAACCCGGAGGTGGGCTACTG
CAGGGACCTGAGCCACATCGCCGCCTTGTTCCTCCTCTATCTTCCTGAGGAGGATGCATTCTGGGCACTG
GTGCAGCTGCTGGCCAGTGAGAGGCACTCCCTGCAGGGATTTCACAGCCCAAATGGCGGGACCGTCCAGG
GGCTCCAAGACCAACAGGAGCATGTGGTAGCCACGTCACAACCCAAGACCATGGGGCATCAGGACAAGAA
AGATCTATGTGGGCAGTGTTCCCCGTTAGGCTGCCTCATCCGGATATTGATTGACGGGATCTCTCTCGGG
CTCACCCTGCGCCTGTGGGACGTGTATCTGGTAGAAGGCGAACAGGCGTTGATGCCGATAACAAGAATCG
CCTTTAAGGTTCAGCAGAAGCGCCTCACGAAGACGTCCAGGTGTGGCCCGTGGGCACGTTTTTGCAACCG
GTTCGTTGATACCTGGGCCAGGGATGAGGACACTGTGCTCAAGCATCTTAGGGCCTCTATGAAGAAACTA
ACAAGAAAGCAGGGGGACCTGCCACCCCCAGCCAAACCCGAGCAAGGGTCGTCGGCATCCAGGCCTGTGC
CGGCTTCACGTGGCGGGAAGACCCTCTGCAAGGGGGACAGGCAGGCCCCTCCAGGCCCACCAGCCCGGTT
CCCGCGGCCCATTTGGTCAGCTTCCCCGCCACGGGCACCTCGTTCTTCCACACCCTGTCCTGGTGGGGCT
GTCCGGGAAGACACCTACCCTGTGGGCACTCAGGGTGTGCCCAGCCCGGCCCTGGCTCAGGGAGGACCTC
AGGGTTCCTGGAGATTCCTGCAGTGGAACTCCATGCCCCGCCTCCCAACGGACCTGGACGTAGAGGGCCC
TTGGTTCCGCCATTATGATTTCAGACAGAGCTGCTGGGTCCGTGCCATATCCCAGGAGGACCAGCTGGCC
CCCTGCTGGCAGGCTGAACACCCTGCGGAGCGGGTGAGATCGGCTTTCGCTGCACCCAGCACTGATTCCG
ACCAGGGCACCCCCTTCAGAGCTAGGGACGAACAGCAGTGTGCTCCCACCTCAGGGCCTTGCCTCTGCGG
CCTCCACTTGGAAAGTTCTCAGTTCCCTCCAGGCTTCTAG

Translation (549 aa):
MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRR
EISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNTEEMKLKNPGRYQIMKEKGKRSSE
HIQRIDRDISGTLRKHMFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWAL
VQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLG
LTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKL
TRKQGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGA
VREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLA
PCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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