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Report for CCDS46193.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46193.1 Public Homo sapiens 19 SHISA7 24 110 108 CCDS HistoryNCBI Gene:729956Re-query CCDS DB by CCDS ID:46193.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46193.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376325.10 ENSP00000365503.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376325.10Link to Ensembl Protein Viewer:ENSP00000365503.3Re-query CCDS DB by Nucleotide ID:ENST00000376325Re-query CCDS DB by Protein ID:ENSP00000365503
Original member Current member NCBI NM_001145176.2 NP_001138648.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145176.2Link to Protein Sequence:NP_001138648.1Re-query CCDS DB by Nucleotide ID:NM_001145176Re-query CCDS DB by Protein ID:NP_001138648Link to BLAST:NP_001138648.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138648.1 538 A6NL88 538 100% 0 0

Chromosomal Locations for CCDS 46193.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 55433156 55433796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55437605 55437754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55440611 55440765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55442193 55442863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1617 nt):
ATGCCGGCCCTCCTGCTCCTCGTACTCCTGGCCTCTAGCGCCGGCCAGGCCAGGGCGCGCCCGTCCAACG
CCACGAGCGCCGAGCCCGCGGGCCCGCTGCCCGCCCTGCTGGCGCACCTGCGGCGCCTGACCGGGGCGCT
GACGGGCGGCGGGGGCGCGGCGAGCCCAGGCGCCAACGGCACCAGGACCGGCCCCGCGGGCGGGGCGGGC
GCGGCGGCCCGGGCGCCCCCTCCCGCCGAGCTCTGCCACGGCTACTACGATGTCATGGGCCAGTACGACG
CCACCTTCAACTGCAGCACCGGCTCCTACCGCTTCTGCTGTGGCACCTGCCACTACCGCTTCTGCTGTGA
GCACCGTCACATGCGCCTGGCGCAGGCCTCCTGCTCCAACTACGACACGCCGCGCTGGGCCACCACGCCG
CCGCCGCTAGCTGGGGGCGCCGGGGGCGCTGGGGGTGCGGGCGGGGGGCCAGGGCCCGGCCAGGCCGGGT
GGTTGGAAGGGGGCCGGACTGGGGGTGCCGGGGGCCGCGGGGGCGAGGGCCCCGGGGGCAGCACAGCCTA
CGTCGTGTGCGGGGTCATCAGCTTCGCCCTGGCCGTGGGCGTCGGCGCCAAAGTGGCCTTCAGCAAGGCG
TCCCGTGCGCCCCGGGCGCACCGGGATATCAACGTGCCCAGAGCTCTGGTGGACATTCTGAGACATCAGG
CGGGGCCTGGGACCCGCCCGGACCGGGCCCGAAGCAGCTCCCTGACCCCGGGGATCGGCGGTCCCGACAG
CATGCCCCCCAGGACGCCCAAGAACCTCTACAACACCGTGAAGACCCCCAACCTCGACTGGCGAGCCTTG
CCGCCGCCCAGCCCCTCCTTGCACTACTCCACGCTGTCCTGCTCTCGGTCCTTCCACAACCTCTCGCATC
TGCCCCCGTCCTACGAGGCTGCCGTGAAATCCGAGCTGAACCGCTACTCTTCCCTCAAGAGGCTGGCCGA
GAAGGATCTGGACGAGGCCTACCTGAAGCGCCGGCCCCTGGAATTGCCCCGCGGCACGCTGCCCCTGCAC
GCGCTGCGGCGGCCGGGCACGGGGGGCGGCTATCGCATGGAGGCCTGGGGCGGCCCAGAGGAGCTGGGCC
TGGCGCCCGCGCCCAACCCCCGGCGGGTCATGTCCCAGGAGCACCTGCTGGGCGATGGTGGCCGTTCGCG
CTACGAGTTCACGCTGCCGCGCGCGCGCCTGGTGTCGCAGGAGCACCTGCTGCTGTCCTCGCCCGAGGCC
CTGCGCCAGAGTCGCGAGCACCTGCTGTCGCCCCCGCGCAGCCCCGCGCTGCCCCCCGACCCCACCGCCC
GGGCCAGCCTGGCCGCCTCGCACTCCAACCTGCTGCTGGGGCCCGGGGGGCCCCCAACACCGCTGCGCGG
GCTGCCGCCACCGTCCAGCCTGCACGCCCACCACCACCACGCCCTGCACGGCTCGCCGCAGCCGGCCTGG
ATGTCCGACGCCGGCGGGGGCGGGGGCACACTGGCCCGCAGGCCGCCCTTCCAGCGCCAGGGCACGCTGG
AGCAGCTGCAGTTCATCCCGGGCCACCACCTGCCCCAGCACCTGCGCACGGCCAGCAAGAACGAGGTGAC
TGTCTGA

Translation (538 aa):
MPALLLLVLLASSAGQARARPSNATSAEPAGPLPALLAHLRRLTGALTGGGGAASPGANGTRTGPAGGAG
AAARAPPPAELCHGYYDVMGQYDATFNCSTGSYRFCCGTCHYRFCCEHRHMRLAQASCSNYDTPRWATTP
PPLAGGAGGAGGAGGGPGPGQAGWLEGGRTGGAGGRGGEGPGGSTAYVVCGVISFALAVGVGAKVAFSKA
SRAPRAHRDINVPRALVDILRHQAGPGTRPDRARSSSLTPGIGGPDSMPPRTPKNLYNTVKTPNLDWRAL
PPPSPSLHYSTLSCSRSFHNLSHLPPSYEAAVKSELNRYSSLKRLAEKDLDEAYLKRRPLELPRGTLPLH
ALRRPGTGGGYRMEAWGGPEELGLAPAPNPRRVMSQEHLLGDGGRSRYEFTLPRARLVSQEHLLLSSPEA
LRQSREHLLSPPRSPALPPDPTARASLAASHSNLLLGPGGPPTPLRGLPPPSSLHAHHHHALHGSPQPAW
MSDAGGGGGTLARRPPFQRQGTLEQLQFIPGHHLPQHLRTASKNEVTV


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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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