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Report for CCDS39202.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
39202.1 |
Public |
Mus musculus |
5 |
Ccdc18 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:73254](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:39202.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 5 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47
Review status: Provisional (this record has not been manually reviewed by the collaboration) Sequence IDs included in CCDS 39202.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000047677.8 |
ENSMUSP00000036507.7 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000047677.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000036507.7](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000047677](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000036507](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_028481.1 |
NP_082757.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_028481.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_082757.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_028481](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_082757](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_082757.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_082757.1 |
1455 |
Q640L5-1 |
1455 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 39202.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (4368 nt): ATGGAATTTATCTCATCAGACTACTGTACTAAAGACAACGACAATGAGGAGGAAAGTTTGCTTGCAAACG TTGCTTCATTAAGACATGAACTCAAAATAACAGAATGGAGTTTGCACAATTTAGGGGAAGAGTTATCCAG TGTTAGTCCAAGTGAAAATTCTGAGTATGTCTGCAGTCCTTCAAGATCTGAAAGGCTTATTTTGGAAGAA CTCACCCAACCTAGCCACCTGGGACGTTTGATTTACCCACCTTATAAGAAAGTTTGTAAAACATCTGATA GTACTGATTATCAAAAGAAATCAAGAGATCAGGTGTCTTTTTCATCTGTTTCTATGGATCAAGAGGTTAA AAACCTTCGAGAGAAACTTCATAAACTTAGGCAACAGAATGCTTGTTTGGTCACACAGAATCATTCTTTA ATGACTAAAATAGAATCTGTCCACTTTGAATTGACACAATCAAAAGCAAAAATTGCTATGCTTGAGTCTG CACAAGAGCAGGCAGCCAACATTCCAATCTTAGAAGAACAGATTATAAATTTGGAAGCAGAAGTTTCAGC TCAAGATAAAGTTTTGAGAGAAGCAGAAGATAAATTAGAGCAGAGTCAGAAAATGGTGATTGAAAAGGAG CACAGTTTACAAGAGGCCAAAGAAGAGTGTATAAAATTGAAGGTGGACTTACTTGAACAGAGTAAACAAG GAAAAAGAGCTGAGCGACAAAGGAATGAAGCCCTCTATAATGCAGAAGAGCTGAGTAAGGCCTTCCAGCT GTACAAAGAAAAAGTGGCTGAAAAACTGGAAAAGGTTCAAGATGAAGAAGAAATATTAGAGAGAAATCTT AGTAACTGTGAAAAGGAAAATAAAAGGCTTCAAGAAAAGTGTAATCTGTATAAAAGTGAACTTGAAATTT TGAAAGAGAAATTCAGGGAGTTAAAAGAAGAACATTACAGTGGAAAAGAAAAATTAATGATTATGGCAAT GAAAAACTCAGAAGTCATGTCACAGTTAACGGAATCTAGACAATGTATTCTGAAGCTAGAGAGGGAGTTA GAGGACAAAGATGAAATAGTACGAGAAAAGTTTTCCTTATTAAATGAAAATCGAGAATTGAAGGTTCGTG TTGCAACACAGAATGAACGACTAGAGTTGTGTCAGCAGGACATTGATAATTCAAGGGTGGAACTGAAGAG TTTAGAAAAACTGATAACCCAGATACCATTAAAAAGAGAAATAGTTGGCTTTAGGTCATCTCTTTGTAAG CACCAGAGGAGTAGTGTTTCTGACAAGGAGGACAAATGCATTGGCTGCTGTGAGGCAAATAAACTCATGA TTTCTGAATTGAGGATTAAGCTTGCAATAAGAGAGGCTGAAATTCAAAAGCTTCATGCAAATCTGACTGT GAACCAGCTCTCTCAAAATGTTGCTAATGATAGTCAAGAATGTGGTAAAGTAAACACGTTAGAAACAGAA CCGGTAAAATTAGGAGGTAGTCAAGTCGAAAGTATAAAGGATGGAGATCAGCAGACTGTGAACAAGCAGT ATGAAAGAGAGAAGCAGCGACTTGCTACCGGGATAGAAGAACTGCGTGCTAAGCTGACACAGATAGAAGC TGAGAACTCTGACTTGAAGGTTAACATGGCACACAGAACTAGTCAGTTTCAGCTAATTCAAGAGGAACTA CTAGAGAAAGCTTCAAATGCTAGCAAACTAGAAAATGAAATGACAAAGAAGTGTTCTCAACTTTTAATTC TAGAGAAACAGCTAGAAGAAAAAATTATTGCATATTCTTCTATTGCTGCAAAAAATGCAGAACTTGAACA AGAACTTATGGAGAAAAATGAAAAAATAAGAAGCCTAGAATCAAATATCAACACAGAACATGAGAAAATT TGTTTTGCTTTTGAAAAAGCAAAGAAAATTCATCTTGAACAGCATAAGGAAATGGAAAAACAGATTGAGC AACTCGAAACTCAACTGGAGAAAAGAGACCAACAGTTTAAAGAACAAGAAAAGACTATGTCCATTTTGCA GCAAGATATACTGTGTAAACAGCATCACCTTGAATCACTAGATAGACTCTTGACAGAAAGTAAAGTGGAA ATGGAAAAAGAAAATATGAAGAAAGATGAAGCTTTAAAAGCATTGCAGATTCATGTATCTGAAGAAACAA TCAAGGTCAGACAACTGGATTCAGCGTTAGAAATCTGTAAGGAAGAGCTTGCTTTGCATTTGAATCAATT GGAAAGAAATAAGGAAAAATTTGAAAGACAGCTGAAGAAGAAATCTGAAGAGGTATATTGTTTGCAGAAA GAGCTAAAGATAAAGACTCATAATCTTGAAGAGACGAGTGAACAAAATGCCATCCTACAGCACACTCTTC AGCAGCAGCAGCAGATGTTACAGCAAGAGACCATGAGAAATGGAGAGCTAGAAGATACTCAGAGTAAACT TGAAAAACAGGTATCAAAGCAAGAACAAGAGCTTCAGAAACAAAGGGAAAGTTCAACAGAAAAGTTGAGA AAAATGGAAGAGAAATATGAAACAGCCATACGTGAAGTGGATTTGAAAAGGCAAAAAATTATCGAGCTAA CTGGTACTGCCAGGCAAGCCAAACTTGAGATGGATCAGTACAAAGAGGAGCTGTCTAAAATGGAAAAAGA AATAATTCATTTGAAGCGAGATGGGGAAAATAAATCCATGCAGCTTTCTCAGTTAGATATGGTTTTAGAT CAAACAAAAACAGAACTAGAAAAGACAACAAATTCAGTGAAGGAGTTAGAAAGGTTACAACACCACACAG AAACTGAATTAACAGAAACCATGCAGAAACGGGAAGCTCTCGAAAACGAACTACAGAATGCTCATGGAGA ATTGAAAAGTACCTTAAGACAACTACAGGAATTGAGAGATGTATTACAAAAGGCTCAGTTATCATTAGAG GAAAAATACACTACAATAAAGGATCTCACTGCTGAACTGAGAGAATGTAAGATGGAGATTGAAGACAAAA AACAAGAACTTATTGAAATGGATCAGGCGCTTAAGGAGAGAAATTGGGAGCTAAAGCAAAGAGCAGCTCA GGTTACACATTTGGATATGACTATTCGTGAACACAGAGGAGAAATGGAGCAAAAAATAATCAAATTGGAG GGTACCCTGGAAAAATCAGAATTAGAACTTAAAGAATGCAACAAACAGGTAGAAAGCTTAAATGAAAAGT TGCAAAATGCCAAAGAACAGCTTCGAGAAAAGGAGTTTATAATGCTCCAAAATGAACAGGAGATATCACA ACTGAAAAAGGAAATCGAAAGAACACAGCAAAGGATGAAAGAAATGGAAAGTGTTATAAAAGAACAGGAA GACTACATTGCTACCCAGTACAAGGAGGTCATTGATTTGGGGCAAGAATTGAGGCTAACCCAGGAGCAAA TGCAGAACACTCATTCAGAACTGGTGGAGGCTCGTCGCCAAGAAGTCCAAGCACAGAGGGAAATAGAAAG GCTTGCTGGTGAACTGGAGGATATAAAACAACTCTCTAAAGAGAAGGAAGCTCATGGAAATCGTTTGGCT GAAGAACTGGGGGCTTCTCAAGTACGTGAAGCTCATTTAGAAGCAAGAATGCAAGCAGAAATAAAGAAAT TATCCTCAGAAGTAGACTCTCTGAAAGAAGCTTATCAGATAGAGATGATTTCACATCAAGAGAACCATGC AAAGTGGAAGCTTTCTGCTGAATCTCAGAAGACGTCTGTTCAACAACTGAATGAACAACTAGAGAAAGCG AAACAAGAATTGGAAGAAGCTCAGGATACTGTGAGCAATTTGCATCAACAAGTTCAAGACAGGAATGAAG TCATTGAAGCTGCAAATGAAGCATTACTTATTAAAGAATCAGAATTAACCAGATTGCAAGCCAAAATTTC TGGACATGAAAAGACAGAAGACACCAAGTATCTACCAGCTCCGTTTACAACTCTAACAGAAATTATACCT GATAGTCAACATCCAAATTTTGCCAAACATTCTCAGATATCACTTTTCAAATGCAGAAAACTACGTCGGT CTATTAGTGCCAGTGACCTGAGTTTCAAAAGTCATGGTAATGACGATCTCTCTGAAGAATTGCTACAGGA CTTAAAAAAAATGCAATTTGAGCAGACTTCAGCGATAGAAAGTGGTCATAAAGACCTACCTTTAACCCAT TCAGAGTCATTTAAACCTCTCCCGTATAACCTAGAAGATGATAGTTCTGAAAGTAATGACTTCAGTACTC TTAGTGGAATGCTGAGATACATAAACAAAGAAGTGAGACTGCTGAAAAAATCTTCTCTGCAAACAGCTAC TGGTTTAAGTCAGGGAGGAAAATTGTAA
Translation (1455 aa): MEFISSDYCTKDNDNEEESLLANVASLRHELKITEWSLHNLGEELSSVSPSENSEYVCSPSRSERLILEE LTQPSHLGRLIYPPYKKVCKTSDSTDYQKKSRDQVSFSSVSMDQEVKNLREKLHKLRQQNACLVTQNHSL MTKIESVHFELTQSKAKIAMLESAQEQAANIPILEEQIINLEAEVSAQDKVLREAEDKLEQSQKMVIEKE HSLQEAKEECIKLKVDLLEQSKQGKRAERQRNEALYNAEELSKAFQLYKEKVAEKLEKVQDEEEILERNL SNCEKENKRLQEKCNLYKSELEILKEKFRELKEEHYSGKEKLMIMAMKNSEVMSQLTESRQCILKLEREL EDKDEIVREKFSLLNENRELKVRVATQNERLELCQQDIDNSRVELKSLEKLITQIPLKREIVGFRSSLCK HQRSSVSDKEDKCIGCCEANKLMISELRIKLAIREAEIQKLHANLTVNQLSQNVANDSQECGKVNTLETE PVKLGGSQVESIKDGDQQTVNKQYEREKQRLATGIEELRAKLTQIEAENSDLKVNMAHRTSQFQLIQEEL LEKASNASKLENEMTKKCSQLLILEKQLEEKIIAYSSIAAKNAELEQELMEKNEKIRSLESNINTEHEKI CFAFEKAKKIHLEQHKEMEKQIEQLETQLEKRDQQFKEQEKTMSILQQDILCKQHHLESLDRLLTESKVE MEKENMKKDEALKALQIHVSEETIKVRQLDSALEICKEELALHLNQLERNKEKFERQLKKKSEEVYCLQK ELKIKTHNLEETSEQNAILQHTLQQQQQMLQQETMRNGELEDTQSKLEKQVSKQEQELQKQRESSTEKLR KMEEKYETAIREVDLKRQKIIELTGTARQAKLEMDQYKEELSKMEKEIIHLKRDGENKSMQLSQLDMVLD QTKTELEKTTNSVKELERLQHHTETELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLE EKYTTIKDLTAELRECKMEIEDKKQELIEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLE GTLEKSELELKECNKQVESLNEKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVIKEQE DYIATQYKEVIDLGQELRLTQEQMQNTHSELVEARRQEVQAQREIERLAGELEDIKQLSKEKEAHGNRLA EELGASQVREAHLEARMQAEIKKLSSEVDSLKEAYQIEMISHQENHAKWKLSAESQKTSVQQLNEQLEKA KQELEEAQDTVSNLHQQVQDRNEVIEAANEALLIKESELTRLQAKISGHEKTEDTKYLPAPFTTLTEIIP DSQHPNFAKHSQISLFKCRKLRRSISASDLSFKSHGNDDLSEELLQDLKKMQFEQTSAIESGHKDLPLTH SESFKPLPYNLEDDSSESNDFSTLSGMLRYINKEVRLLKKSSLQTATGLSQGGKL
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