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Report for CCDS76204.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
76204.1 Public Homo sapiens 1 ITGA10 24 110 108 CCDS HistoryNCBI Gene:8515Re-query CCDS DB by CCDS ID:76204.1Re-query CCDS DB by GeneID:8515See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 76204.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000539363.2 ENSP00000439894.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000539363.2Link to Ensembl Protein Viewer:ENSP00000439894.1Re-query CCDS DB by Nucleotide ID:ENST00000539363Re-query CCDS DB by Protein ID:ENSP00000439894
Original member Current member NCBI NM_001303041.2 NP_001289970.1 Accepted alive Link to Nucleotide Sequence:NM_001303041.2Link to Protein Sequence:NP_001289970.1Re-query CCDS DB by Nucleotide ID:NM_001303041Re-query CCDS DB by Protein ID:NP_001289970Link to BLAST:NP_001289970.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289970.1 1024 O75578-3 1024 100% 0 0

Chromosomal Locations for CCDS 76204.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 145892798 145892863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145893161 145893274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145893540 145893635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145895280 145895393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145895631 145895711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145895983 145896096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145896268 145896352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145896769 145896858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145897011 145897087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145897247 145897339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145897512 145897653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145897815 145897900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145898110 145898223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145898936 145899078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145899175 145899341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145900057 145900187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145900790 145900993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145901135 145901278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145901516 145901664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145901877 145902021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145902246 145902319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145902454 145902619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145902811 145902961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145904052 145904200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145904684 145904811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145909963 145910014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3075 nt):
ATGGAACTCCCCTTCGTCACTCACCTGTTCTTGCCCCTGGTGTTCCTGACAGGCTGCCCAACATACATGG
ATGTTGTCATTGTCTTGGATGGCTCCAACAGCATCTACCCCTGGTCTGAAGTTCAGACCTTCCTACGAAG
ACTGGTAGGGAAACTGTTTATTGACCCAGAACAGATACAGGTGGGACTGGTACAGTATGGGGAGAGCCCT
GTACATGAGTGGTCCCTGGGAGATTTCCGAACGAAGGAAGAAGTGGTGAGAGCAGCAAAGAACCTCAGTC
GGCGGGAGGGACGAGAAACAAAGACTGCCCAAGCAATAATGGTGGCCTGCACAGAAGGGTTCAGTCAGTC
CCATGGGGGCCGACCCGAGGCTGCCAGGCTACTGGTGGTTGTCACTGATGGAGAGTCCCATGATGGAGAG
GAGCTTCCTGCAGCACTAAAGGCCTGTGAGGCTGGAAGAGTGACACGCTATGGGATTGCAGTCCTTGGTC
ACTACCTCCGGCGGCAGCGAGATCCCAGCTCTTTCCTGAGAGAAATTAGAACTATTGCCAGTGATCCAGA
TGAGCGATTCTTCTTCAATGTCACAGATGAGGCTGCTCTGACTGACATTGTGGATGCACTAGGAGATCGG
ATTTTTGGCCTTGAAGGGTCCCATGCAGAAAACGAAAGCTCCTTTGGGCTGGAAATGTCTCAGATTGGTT
TCTCCACTCATCGGCTAAAGGATGGGATTCTTTTTGGGATGGTGGGGGCCTATGACTGGGGAGGCTCTGT
GCTATGGCTTGAAGGAGGCCACCGCCTTTTCCCCCCACGAATGGCACTGGAAGACGAGTTCCCCCCTGCA
TTGCAGAACCATGCAGCCTACCTGGGTTACTCTGTTTCTTCCATGCTTTTGCGGGGTGGACGCCGCCTGT
TTCTCTCTGGGGCTCCTCGATTTAGACATCGAGGAAAAGTCATCGCCTTCCAGCTTAAGAAAGATGGGGC
TGTGAGGGTTGCCCAGAGCCTCCAGGGGGAGCAGATTGGTTCATACTTTGGCAGTGAGCTCTGCCCATTG
GATACAGATAGGGATGGAACAACTGATGTCTTACTTGTGGCTGCCCCCATGTTCCTGGGACCCCAGAACA
AGGAAACAGGACGTGTTTATGTGTATCTGGTAGGCCAGCAGTCCTTGCTGACCCTCCAAGGAACACTTCA
GCCAGAACCCCCCCAGGATGCTCGGTTTGGCTTTGCCATGGGAGCTCTTCCTGATCTGAACCAAGATGGT
TTTGCTGATGTGGCTGTGGGGGCGCCTCTGGAAGATGGGCACCAGGGAGCACTGTACCTGTACCATGGAA
CCCAGAGTGGAGTCAGGCCCCATCCTGCCCAGAGGATTGCTGCTGCCTCCATGCCACATGCCCTCAGCTA
CTTTGGCCGAAGTGTGGATGGTCGGCTAGATCTGGATGGAGATGATCTGGTCGATGTGGCTGTGGGTGCC
CAGGGGGCAGCCATCCTGCTCAGCTCCCGGCCCATTGTCCATCTGACCCCATCACTGGAGGTGACCCCAC
AGGCCATCAGTGTGGTTCAGAGGGACTGTAGGCGGCGAGGCCAAGAGGCAGTCTGTCTGACTGCAGCCCT
TTGCTTCCAAGTGACCTCCCGTACTCCTGGTCGCTGGGATCACCAATTCTACATGAGGTTCACCGCATCA
CTGGATGAATGGACTGCTGGGGCACGTGCAGCATTTGATGGCTCTGGCCAGAGGTTGTCCCCTCGGAGGC
TCCGGCTCAGTGTGGGGAATGTCACTTGTGAGCAGCTACACTTCCATGTGCTGGATACATCAGATTACCT
CCGGCCAGTGGCCTTGACTGTGACCTTTGCCTTGGACAATACTACAAAGCCAGGGCCTGTGCTGAATGAG
GGCTCACCCACCTCTATACAAAAGCTGGTCCCCTTCTCAAAGGATTGTGGCCCTGACAATGAATGTGTCA
CAGACCTGGTGCTTCAAGTGAATATGGACATCAGAGGCTCCAGGAAGGCCCCATTTGTGGTTCGAGGTGG
CCGGCGGAAAGTGCTGGTATCTACAACTCTGGAGAACAGAAAGGAAAATGCTTACAATACGAGCCTGAGT
CTCATCTTCTCTAGAAACCTCCACCTGGCCAGTCTCACTCCTCAGAGAGAGAGCCCAATAAAGGTGGAAT
GTGCCGCCCCTTCTGCTCATGCCCGGCTCTGCAGTGTGGGGCATCCTGTCTTCCAGACTGGAGCCAAGGT
GACCTTTCTGCTAGAGTTTGAGTTTAGCTGCTCCTCTCTCCTGAGCCAGGTCTTCGTGAAGCTGACTGCC
AGCAGTGACAGCCTGGAGAGAAATGGGACCCTTCAAGATAACACAGCCCAGACCTCAGCCTACATCCAAT
ATGAGCCCCACCTCCTGTTCTCTAGTGAGTCTACCCTGCACCGCTATGAGGTTCACCCATATGGGACCCT
CCCAGTGGGTCCTGGCCCAGAATTCAAAACCACTCTCAGGGTTCAGAACCTAGGCTGCTATGTGGTCAGT
GGCCTCATCATCTCAGCCCTCCTTCCAGCTGTGGCCCATGGGGGCAATTACTTCCTATCACTGTCTCAAG
TCATCACTAACAATGCAAGCTGCATAGTGCAGAACCTGACTGAACCCCCAGGCCCACCTGTGCATCCAGA
GGAGCTTCAACACACAAACAGACTGAATGGGAGCAATACTCAGTGTCAGGTGGTGAGGTGCCACCTTGGG
CAGCTGGCAAAGGGGACTGAGGTCTCTGTTGGACTATTGAGGCTGGTTCACAATGAATTTTTCCGAAGAG
CCAAGTTCAAGTCCCTGACGGTGGTCAGCACCTTTGAGCTGGGAACCGAAGAGGGCAGTGTCCTACAGCT
GACTGAAGCCTCCCGTTGGAGTGAGAGCCTCTTGGAGGTGGTTCAGACCCGGCCTATCCTCATCTCCCTG
TGGATCCTCATAGGCAGTGTCCTGGGAGGGTTGCTCCTGCTTGCTCTCCTTGTCTTCTGCCTGTGGAAGC
TTGGCTTCTTTGCCCATAAGAAAATCCCTGAGGAAGAAAAAAGAGAAGAGAAGTTGGAGCAATGA

Translation (1024 aa):
MELPFVTHLFLPLVFLTGCPTYMDVVIVLDGSNSIYPWSEVQTFLRRLVGKLFIDPEQIQVGLVQYGESP
VHEWSLGDFRTKEEVVRAAKNLSRREGRETKTAQAIMVACTEGFSQSHGGRPEAARLLVVVTDGESHDGE
ELPAALKACEAGRVTRYGIAVLGHYLRRQRDPSSFLREIRTIASDPDERFFFNVTDEAALTDIVDALGDR
IFGLEGSHAENESSFGLEMSQIGFSTHRLKDGILFGMVGAYDWGGSVLWLEGGHRLFPPRMALEDEFPPA
LQNHAAYLGYSVSSMLLRGGRRLFLSGAPRFRHRGKVIAFQLKKDGAVRVAQSLQGEQIGSYFGSELCPL
DTDRDGTTDVLLVAAPMFLGPQNKETGRVYVYLVGQQSLLTLQGTLQPEPPQDARFGFAMGALPDLNQDG
FADVAVGAPLEDGHQGALYLYHGTQSGVRPHPAQRIAAASMPHALSYFGRSVDGRLDLDGDDLVDVAVGA
QGAAILLSSRPIVHLTPSLEVTPQAISVVQRDCRRRGQEAVCLTAALCFQVTSRTPGRWDHQFYMRFTAS
LDEWTAGARAAFDGSGQRLSPRRLRLSVGNVTCEQLHFHVLDTSDYLRPVALTVTFALDNTTKPGPVLNE
GSPTSIQKLVPFSKDCGPDNECVTDLVLQVNMDIRGSRKAPFVVRGGRRKVLVSTTLENRKENAYNTSLS
LIFSRNLHLASLTPQRESPIKVECAAPSAHARLCSVGHPVFQTGAKVTFLLEFEFSCSSLLSQVFVKLTA
SSDSLERNGTLQDNTAQTSAYIQYEPHLLFSSESTLHRYEVHPYGTLPVGPGPEFKTTLRVQNLGCYVVS
GLIISALLPAVAHGGNYFLSLSQVITNNASCIVQNLTEPPGPPVHPEELQHTNRLNGSNTQCQVVRCHLG
QLAKGTEVSVGLLRLVHNEFFRRAKFKSLTVVSTFELGTEEGSVLQLTEASRWSESLLEVVQTRPILISL
WILIGSVLGGLLLLALLVFCLWKLGFFAHKKIPEEEKREEKLEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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