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Report for CCDS15885.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15885.1 Public Mus musculus 2 1700001O22Rik 23 108 98 CCDS HistoryNCBI Gene:73598Re-query CCDS DB by CCDS ID:15885.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15885.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050003.8 ENSMUSP00000058055.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050003.8Link to Ensembl Protein Viewer:ENSMUSP00000058055.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000050003Re-query CCDS DB by Protein ID:ENSMUSP00000058055
Original member Current member NCBI NM_198000.3 NP_932117.2 Accepted alive Link to Nucleotide Sequence:NM_198000.3Link to Protein Sequence:NP_932117.2Re-query CCDS DB by Nucleotide ID:NM_198000Re-query CCDS DB by Protein ID:NP_932117Link to BLAST:NP_932117.2

Chromosomal Locations for CCDS 15885.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 30795695 30795805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30796145 30796283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30796401 30796566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30797868 30797980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30800724 30800816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30800914 30801001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30801140 30801557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1128 nt):
ATGTTCCGGCGCCAGTCCATGGAGGGGACCCCGGCCTACAAGCCCAAGGGATATCCCGACGGGACCACCC
AGCGCCGCCCTGTTAAGCGGCTGCCGATGCTGCTGCCAATGCTCGAAGGCCGTGTGGGGCGAGATGTAGA
CGGCGCGTGGCGGCGGGACCGCAAGTCCCAGCGCCTGCCTTGCGGGTCCCCCGAGTCCCCGAACGCTCGG
CGAGACCGTGGGACCGCGCGCGCACTGCTACTGCCGTCGCTGCAGCCGAGCAGCTCGGCCCGGGAGGCGG
GAACTCGGGGGAACCGGCAGCCTGCAGCCCGCGACAACCCTGACTCCCTGGGCACGCTGCTGGGGAAGCT
GCTGCCCAACAAGTTCCGCCACTTCCTGCACCACCTGAGCGCCGAGAGCGCAGACCCAGAGGCGGACCCA
CCCTCAGCGCCACATAACCCTAGGAGTACATCAAATCACTGCCTAGCTTCTCGGTCTTCCAGCTGCTTAT
TCCTCCCAGACCTGTGGGACAAACCATTGCACTGGGACAACAATTTTAAAGAGAAGACTACCCTGGGGCT
CCCAAGAGGTGAACTTGCCAGAGCCAAAAAGGCCCATCCCCCCGCTGGAGAAGGCTCAAGACCCCGAAAA
CGCTATTGTCCCTTCCGGGTACGATTCGCAGACGAGACCCTGCAGGACACAGCACTCCGGTACTGGGAAC
GCAACCGTGCAGTCCGGCAGAATATCTTTCCGAGTGAGCAGACGGCTTTGCCAGCTGTATCTGTGTCAGA
ACGGGTGCTCGGGAGTGTTGGGAGATGGTTGGACAGTCTGCCCAGAGCCCTTTATCCCAGGGTCCAAGAC
ACTGTGGCCGGCTCCTCATTCTGGACCTGCCCCCGCGTGTCAGCTCAGGAACCTCAGCTCTACCTTTCTG
AGGACTCCTCCGTGAGCAGCCACCTACCCTTCATCTCCAGGGCCACCATCCCAAGGCCACGGGGAGGCCT
CAGAACCTTCCTGGACACCCCTAACAATGTGGATCAGGAATCCTTTCTGCCCAGTTTGGTGCTGCAGTCT
GTCCTGAAGCAAGGCCGCCCTAAGGGCTACCAGCTGCTCCTGCCGTCCACCACAAACCGGCAGCAGGCTC
ACAGGTGA

Translation (375 aa):
MFRRQSMEGTPAYKPKGYPDGTTQRRPVKRLPMLLPMLEGRVGRDVDGAWRRDRKSQRLPCGSPESPNAR
RDRGTARALLLPSLQPSSSAREAGTRGNRQPAARDNPDSLGTLLGKLLPNKFRHFLHHLSAESADPEADP
PSAPHNPRSTSNHCLASRSSSCLFLPDLWDKPLHWDNNFKEKTTLGLPRGELARAKKAHPPAGEGSRPRK
RYCPFRVRFADETLQDTALRYWERNRAVRQNIFPSEQTALPAVSVSERVLGSVGRWLDSLPRALYPRVQD
TVAGSSFWTCPRVSAQEPQLYLSEDSSVSSHLPFISRATIPRPRGGLRTFLDTPNNVDQESFLPSLVLQS
VLKQGRPKGYQLLLPSTTNRQQAHR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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