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Report for CCDS28982.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28982.1 Public Mus musculus 17 Ndufaf7 23 108 98 CCDS HistoryNCBI Gene:73694Re-query CCDS DB by CCDS ID:28982.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28982.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024887.5 ENSMUSP00000024887.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024887.5Link to Ensembl Protein Viewer:ENSMUSP00000024887.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000024887Re-query CCDS DB by Protein ID:ENSMUSP00000024887
Original member Current member NCBI NM_028611.3 NP_082887.2 Accepted alive Link to Nucleotide Sequence:NM_028611.3Link to Protein Sequence:NP_082887.2Re-query CCDS DB by Nucleotide ID:NM_028611Re-query CCDS DB by Protein ID:NP_082887Link to BLAST:NP_082887.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082887.2 436 Q9CWG8-1 436 100% 0 0

Chromosomal Locations for CCDS 28982.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 78937165 78937201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78937491 78937654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78938541 78938621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78939595 78939705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78942069 78942282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78943253 78943311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78943834 78943944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78944941 78945084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78946296 78946469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78946875 78947090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1311 nt):
ATGAATGCTTTGGTGAGACGCTGCGTGGCCCGCGCGGGCCTTCCCTGTATTTGGAGAGGGAAATGCTACA
GCTCCGGGAATGAGCCGGCAGAAAGCAACCAGGTGACACCGATGCTGCGGCATCTTATGTACAAAATAAA
GTCTACAGGTCCCATCACTGTGGCCGAGTACATGAAGGAGGTTTTGACTAACCCAGCCAAGGGATATTAT
GTGCATCAGGATATGCTAGGAGAAAAAGGAGACTTTATTACTTCACCTGAAATAAGCCAAATCTTCGGGG
AGCTACTAGGGGTGTGGTTTGTTAGTGAATGGATAGCCTCTGGAAAAAGCCCAGCATTCCAGCTGGTGGA
ACTTGGCCCTGGTCGGGGCACCCTCACAGCAGATATTTTGAGGGTGTTCAGTCAGCTTGGGTCTGTGCTA
AAGACCTGTGCCATCTCAATACACCTTGTAGAGGTGAGCCAGAAACTAAGTGAGATCCAAGCACTGACAC
TGGCTGAGGAGAAGGTCCCATTGGAGAGAGACGCTGAATCCCTGGTGTACATGAAAGGTGTCACAAAGTC
TGGGATTCCAGTCTCCTGGTACCGAGACCTGAAGGATGTTCCTGAAGGATACAGCTTGTACCTCGCCCAT
GAGTTTTTTGATGTTCTTCCTGTGCATAAATTTCAGAAAACACCACGCGGATGGAGAGAAGTGTTTGTTG
ATGTCGACCCACAAGCTTCTGATAAACTGAGGTTCGTCTTGGCGCCTTGTGCGACCCCTGCAGAAGCCTT
CATTCAACGTGATGAAAGGAGGGAACATGTGGAAGTATGTCCCGATGCTGGGGTTATCATCCAAGAACTG
TCCCAGCGCATTGCGTCAACTGGAGGTGCAGCCCTGATTGCGGATTACGGTCACGATGGCACAAAGACAG
ACACCTTGAGAGGGTTTTATGGACACCAGCTTCACGATGTCTTAATCGCTCCTGGAACAGCAGACCTGAC
AGCTGATGTGGACTTCAGTTACCTGCGCAGAATGGCACAAGGAAAAGTAGCCTCTCTGGGTCCAGTGGAA
CAGCGAACATTTTTAAAAAACATGGGCATTGATGTCCGGCTGAAGGTTCTCTTGGATAAAGCAGGTGAGC
CATCTGCGAAGCAGCAGCTACTTGGAGGGTATGATATGTTAATGAATCCTCAGAAGATGGGAGAAAGATT
TCACTTCTTTGCCTTGCTACCTCATCAGAGACTTCATGGGGGGAGTCAAGAAAGGAATGCCTGCCAGTCA
AAAACCCCCTCCTCCTCTGTAGCTGGGTTTGATGAACTTGTTTGGCAGTGA

Translation (436 aa):
MNALVRRCVARAGLPCIWRGKCYSSGNEPAESNQVTPMLRHLMYKIKSTGPITVAEYMKEVLTNPAKGYY
VHQDMLGEKGDFITSPEISQIFGELLGVWFVSEWIASGKSPAFQLVELGPGRGTLTADILRVFSQLGSVL
KTCAISIHLVEVSQKLSEIQALTLAEEKVPLERDAESLVYMKGVTKSGIPVSWYRDLKDVPEGYSLYLAH
EFFDVLPVHKFQKTPRGWREVFVDVDPQASDKLRFVLAPCATPAEAFIQRDERREHVEVCPDAGVIIQEL
SQRIASTGGAALIADYGHDGTKTDTLRGFYGHQLHDVLIAPGTADLTADVDFSYLRRMAQGKVASLGPVE
QRTFLKNMGIDVRLKVLLDKAGEPSAKQQLLGGYDMLMNPQKMGERFHFFALLPHQRLHGGSQERNACQS
KTPSSSVAGFDELVWQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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