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Report for CCDS49113.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49113.1 Public Mus musculus 12 Fcf1 23 108 98 CCDS HistoryNCBI Gene:73736Re-query CCDS DB by CCDS ID:49113.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49113.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021669.14 ENSMUSP00000021669.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021669.14Link to Ensembl Protein Viewer:ENSMUSP00000021669.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000021669Re-query CCDS DB by Protein ID:ENSMUSP00000021669
Original member Current member NCBI NM_028632.2 NP_082908.2 Accepted alive Link to Nucleotide Sequence:NM_028632.2Link to Protein Sequence:NP_082908.2Re-query CCDS DB by Nucleotide ID:NM_028632Re-query CCDS DB by Protein ID:NP_082908Link to BLAST:NP_082908.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082908.2 198 Q9CTH6 198 100% 0 0

Chromosomal Locations for CCDS 49113.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 84970963 84970965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84971215 84971282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84972990 84973061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84974091 84974239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84979395 84979467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84980515 84980602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84982236 84982330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84983169 84983217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (597 nt):
ATGGGGAAGCAAAAGAAAACAAGGAAATATGCGACTATGAAGCGAATGCTCAGTCTGAGAGACGAGCGAC
TTAAAGAAAAGGATAGGTTGAAGCCTAAGAAGAAAGAGAAGAAAGATCCGAGCGCGCTGAAGGAAAGAGA
AGTCCCCCAGCATCCTTCCTGCTTGTTCTTCCAGTATAATACACAGCTGGGTCCACCTTACCACATCCTT
GTCGATACCAACTTCATCAACTTTTCCATTAAGGCCAAACTGGACTTAGTGCAGTCAATGATGGACTGTC
TGTATGCCAAGTGTATCCCTTGTATAACTGATTGTGTAATGGCTGAAATTGAGAAATTGGGACAGAAGTT
TCGTGTGGCACTAAGAATCGCTAAGGATCCACGGTTTGACCGATTGCCGTGCACACACAAAGGAACCTAC
GCTGACGACTGCTTGGTACAGAGAGTAACTCAGCACAAGTGTTACATTGTGGCCACAGTTGACCGTGACC
TCAAACGAAGAATCCGGAAGATCCCTGGCGTCCCTATCATGTACTTATCTAACCACAGATACAACATCGA
GCGGATGCCAGATGATTATGGAGCCCCTCGCTTCTAA

Translation (198 aa):
MGKQKKTRKYATMKRMLSLRDERLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYNTQLGPPYHIL
VDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKFRVALRIAKDPRFDRLPCTHKGTY
ADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYLSNHRYNIERMPDDYGAPRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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