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Report for CCDS49722.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49722.1 Public Mus musculus 15 Spmip11 23 108 98 CCDS HistoryNCBI Gene:73863Re-query CCDS DB by CCDS ID:49722.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49722.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023728.7 ENSMUSP00000023728.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023728.7Link to Ensembl Protein Viewer:ENSMUSP00000023728.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000023728Re-query CCDS DB by Protein ID:ENSMUSP00000023728
Original member Current member NCBI NM_001201322.1 NP_001188251.1 Accepted alive Link to Nucleotide Sequence:NM_001201322.1Link to Protein Sequence:NP_001188251.1Re-query CCDS DB by Nucleotide ID:NM_001201322Re-query CCDS DB by Protein ID:NP_001188251Link to BLAST:NP_001188251.1

Chromosomal Locations for CCDS 49722.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 98571046 98571124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98585270 98585392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98588553 98588697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98589412 98589460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (396 nt):
ATGGCTTTCTTCAACTTATATCTACTAGGATATCAACATTACTTTCAGAGTAAAAAGAGAAACACAGCTC
AAGAAACAAACCAGAAGGATGAAGTGCCCACAAGGCTTCCCCCGATTATCTCAGAAGATGGTAATTATTC
TGTGCACCAGAACAGCCATGAGAGGTACCAGGAAGCTGTGCGAAAGGTGTTGTTAAAAACGTTCCCCAAT
CAGGTCTTCAGAGTCCCTGTGACTGATGCTCAGAACTTCAGCTTCTGGCGGTCCAACATCCCAGGCGTGC
GTCCAGAGAAAGCCATTCCTTGGATCAAGACTCCACACCATTGTCTCATTAAAAGCCCAATGACCAGATT
TGTGGACCATTCTCATCTCAATGACAAAACCTTCAGTCTTTACTGA

Translation (131 aa):
MAFFNLYLLGYQHYFQSKKRNTAQETNQKDEVPTRLPPIISEDGNYSVHQNSHERYQEAVRKVLLKTFPN
QVFRVPVTDAQNFSFWRSNIPGVRPEKAIPWIKTPHHCLIKSPMTRFVDHSHLNDKTFSLY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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