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Report for CCDS14962.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14962.1 Public Mus musculus 1 Rftn2 23 108 98 CCDS HistoryNCBI Gene:74013Re-query CCDS DB by CCDS ID:14962.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14962.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027121.14 ENSMUSP00000027121.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027121.14Link to Ensembl Protein Viewer:ENSMUSP00000027121.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000027121Re-query CCDS DB by Protein ID:ENSMUSP00000027121
Original member NCBI NM_028713.1 NP_082989.1 Updated not alive Link to Nucleotide Sequence:NM_028713.1Link to Protein Sequence:NP_082989.1Re-query CCDS DB by Nucleotide ID:NM_028713Re-query CCDS DB by Protein ID:NP_082989
Current member NCBI NM_028713.2 NP_082989.1 Accepted alive Link to Nucleotide Sequence:NM_028713.2Link to Protein Sequence:NP_082989.1Re-query CCDS DB by Nucleotide ID:NM_028713Re-query CCDS DB by Protein ID:NP_082989Link to BLAST:NP_082989.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082989.1 500 Q8CHX7-1 500 100% 0 0

Chromosomal Locations for CCDS 14962.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 55171810 55172082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 55184950 55185028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 55194244 55194347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 55195516 55195637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 55204183 55204392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 55206336 55206615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 55211150 55211261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 55214120 55214303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 55226121 55226259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1503 nt):
ATGGGGTGCGGACTTAGGAAGCTGGAAGACCCTGATGAAAGCAGCCCTGGAAAAATATTTTCTACCCTGA
AGAGACCGCAAGTGGAAACAAAGACAGAATTTGCTTATGAATACGCCCTGCTGGACTTTACTTTACAAGC
TTCAACAAATCCAGACGTCATCAAGATAAATTCAGTCCTGGATATAGTTGCCAAAGTGGAAGACTATTAT
CTTAAGGGCTATGTTGTTGGGGCCATTCACCCAGTTATACAACCTGTGGGGCAGCGGAAGCACCTTCCAG
CAAGTCACCTGTACAGGGCGGTGCTGTCCCGGCTGAAGCTAAGCCCCAAGCATTCTGCAGCAGGCGGACA
AAGGCGCGCAAGGCTTGTGATGGAGGAGTGTCCACTAACTTGTGAGGCACAAGCAAACGACGCTGCAAAG
GAACTCATGGACAAGATTAATGCCGCTGCTAAAAGAGGGATGAAGTTTGTTGGGCTGGTCTCCCAGTGCT
ACTTGCCATCTATGCACTGTAATGGAGCCAGCCACGATGGAGTTGCAGAGTCGGGGCTACACGTGAGACA
AGATTCACAAGACAACTGCAAAGGCTGGAATGAAGGAGCCCTTGGTGGACACTTGTCTGAAAGTGGAGTG
GAGGAGGAACCTCAGCATGAAAGTGGACAGCATCAGACAGAGAGGAACAGCAGCCCCAGCTACGCTAACC
CAAAGCGGGGAGAAGCCCCAGATGGTAAGCTGTACATGGTCTTCAATGCTTTTGAGGAAGATGCGGCCAG
CTGGGCCTATCAGGAAGGTGTCCTGTCCATGAAAGTGACGCGGAAGGGAGCTGTCATCAGCGCTCTGGAC
GCCAACTGGCTAGAACTAACGACATTTTACTATAAGCAAGGCTTCTCTTTAATTGACTCTTTTGTGTGCT
GGGAGACACCTAAAGGGGACCAGTTACCTAAATCTTTGGAAGGCTTTTTTATCTACGAAGAAGAAGGATC
TGGAGTCCCAGGTTCTAACAGGAGAGGAAACGACGCCATTGTGGTGGAGCAGTGGACAGTCATTGAGGGC
TGTGAAATTAAAACAGATTACGGCCCCCTGCTGCACACCCTGGCTGAGTTTGGATGGCTTCTGACAAGCG
TGTTGCCTACCCCGATATTGAGACATGACAGTGAAGGGAATTTGGCTACCAAGCAAGTCGTATTTCTCCA
AAGGCCGGTTACGTGGAACTCAGCTGCTCAAACCCCAGAAAGGAAAGGCAGCCGGCTGCTGAAGGGTGAA
GACAGAAACAAGGTCAGCAGCAGGAGCCTAGGCCTGGACACAAATGCATCCCAAGCCGCAGGAGGCCGAG
CCCCTCTTGAGGAGGGCTCCCTCTCTCCGTCCAGGGAGTGCTGGACCAAGGAAGAGCGGCCCGCACAGAG
CGACAGCTTCTCTGGGTTCAGTAGCAGTGACAGTGTCCTCCGGGAACTCGATGACGGACAGTTTGACCAG
GAAGAGGGCGTGACACAGGTCACTTGCATGTGA

Translation (500 aa):
MGCGLRKLEDPDESSPGKIFSTLKRPQVETKTEFAYEYALLDFTLQASTNPDVIKINSVLDIVAKVEDYY
LKGYVVGAIHPVIQPVGQRKHLPASHLYRAVLSRLKLSPKHSAAGGQRRARLVMEECPLTCEAQANDAAK
ELMDKINAAAKRGMKFVGLVSQCYLPSMHCNGASHDGVAESGLHVRQDSQDNCKGWNEGALGGHLSESGV
EEEPQHESGQHQTERNSSPSYANPKRGEAPDGKLYMVFNAFEEDAASWAYQEGVLSMKVTRKGAVISALD
ANWLELTTFYYKQGFSLIDSFVCWETPKGDQLPKSLEGFFIYEEEGSGVPGSNRRGNDAIVVEQWTVIEG
CEIKTDYGPLLHTLAEFGWLLTSVLPTPILRHDSEGNLATKQVVFLQRPVTWNSAAQTPERKGSRLLKGE
DRNKVSSRSLGLDTNASQAAGGRAPLEEGSLSPSRECWTKEERPAQSDSFSGFSSSDSVLRELDDGQFDQ
EEGVTQVTCM


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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