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Report for CCDS15706.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15706.1 Public Mus musculus 2 Nebl 23 108 98 CCDS HistoryNCBI Gene:74103Re-query CCDS DB by CCDS ID:15706.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15706.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028080.11 ENSMUSP00000028080.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028080.11Link to Ensembl Protein Viewer:ENSMUSP00000028080.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000028080Re-query CCDS DB by Protein ID:ENSMUSP00000028080
Original member Current member NCBI NM_028757.3 NP_083033.1 Accepted alive Link to Nucleotide Sequence:NM_028757.3Link to Protein Sequence:NP_083033.1Re-query CCDS DB by Nucleotide ID:NM_028757Re-query CCDS DB by Protein ID:NP_083033Link to BLAST:NP_083033.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083033.1 270 Q9DC07-1 270 100% 0 0

Chromosomal Locations for CCDS 15706.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 17348694 17348870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17350705 17350811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17374185 17374356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17529910 17530017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17590093 17590177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17729369 17729463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17730793 17730861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (813 nt):
ATGAATCCCCAGTGCGCCCGCTGCGGAAAAGTGGTGTATCCCACAGAGAAAGTCAACTGTCTAGATAAGT
ATTGGCATAAAGGATGTTTCCACTGCGAGGTCTGCAAGATGGCTCTCAACATGAACAACTACAAAGGCTA
TGAAAAGAAGCCCTATTGCAATGCACACTACCCAAAGCAGTCCTTCACCACAGTGGCGGATACACCTGAA
AACCTTCGCCTGAAGCAGCAAAGTGAACTGCAGAGCCAGGTCAAGTACAAAAGAGATTTTGAAGAAAGCA
AAGGCAGGGGCTTCAGCATTGTCACAGATACTCCTGAGCTGCAGAGGCTGAAGAGGACCCAGGAGCAGAT
CAGTAATGTCAAATACCATGAAGATTTTGAGAAGACAAAGGGAAGAGGCTTCACTCCCGTTGTGGATGAT
CCTGTGACTGAACGGGTGAGGAAGAGCACCCAGGTTGTGAGCGATGCTGCCTATAAAGGGGTCCAGCCAC
ATGTTGTGGAGATGGACAGAAGACCTGGGATCATTGTTGCACCTGTCCTTCCTGGAGCTTACCAGCAGAG
CCATTCCCAAGGCTATGGGTACATGCATCAGACCAGCGTGTCGTCCATGAGGTCAATGCAGCCTCCAGCA
CATCTAAGGACCTACCGCGCCATGTACGATTATAGCGCCCAGGATGAAGATGAGGTCTCCTTCCGAGATG
GTGACTACATTGTCAACGTGCAGCCCATTGATGATGGCTGGATGTATGGCACCGTGCAGAGAACCGGGAG
AACGGGCATGCTCCCAGCAAATTACATTGAGTTTGTGAATTAA

Translation (270 aa):
MNPQCARCGKVVYPTEKVNCLDKYWHKGCFHCEVCKMALNMNNYKGYEKKPYCNAHYPKQSFTTVADTPE
NLRLKQQSELQSQVKYKRDFEESKGRGFSIVTDTPELQRLKRTQEQISNVKYHEDFEKTKGRGFTPVVDD
PVTERVRKSTQVVSDAAYKGVQPHVVEMDRRPGIIVAPVLPGAYQQSHSQGYGYMHQTSVSSMRSMQPPA
HLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFVN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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