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Report for CCDS18050.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18050.1 Public Mus musculus 4 Smu1 23 108 98 CCDS HistoryNCBI Gene:74255Re-query CCDS DB by CCDS ID:18050.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18050.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030117.4 ENSMUSP00000030117.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030117.4Link to Ensembl Protein Viewer:ENSMUSP00000030117.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000030117Re-query CCDS DB by Protein ID:ENSMUSP00000030117
Original member Current member NCBI NM_021535.4 NP_067510.3 Accepted alive Link to Nucleotide Sequence:NM_021535.4Link to Protein Sequence:NP_067510.3Re-query CCDS DB by Nucleotide ID:NM_021535Re-query CCDS DB by Protein ID:NP_067510Link to BLAST:NP_067510.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067510.3 513 Q3UKJ7-1 513 100% 0 0

Chromosomal Locations for CCDS 18050.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 40737297 40737395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40738290 40738442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40739519 40739686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40743015 40743141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40744031 40744158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40745452 40745568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40748539 40748658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40751925 40752053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40753487 40753597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40754508 40754660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40755627 40755837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40757777 40757802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1542 nt):
ATGTCGATCGAAATCGAGTCTTCCGATGTGATCCGACTAATCATGCAGTACTTGAAGGAGAACAGTTTAC
ATCGGGCACTGGCCACCTTACAGGAGGAAACTACTGTCTCTCTGAATACTGTGGACAGCATTGAAAGTTT
CGTGGCTGATATTAATAGTGGCCATTGGGATACTGTTTTACAGGCTATACAGTCTCTGAAATTGCCAGAC
AAAACCCTTATTGATCTCTATGAACAGGTTGTTTTGGAATTGATAGAGCTTCGTGAATTGGGTGCTGCCA
GGTCACTTCTGAGACAGACTGACCCCATGATTATGTTAAAGCAAACACAACCAGAGCGCTATATTCATCT
GGAAAACCTCTTAGCTAGATCTTACTTTGATCCTCGTGAGGCATATCCAGATGGAAGTAGCAAAGAGAAA
AGGAGAGCAGCGATTGCCCAGGCTTTAGCTGGGGAAGTCAGCGTGGTGCCACCTTCTCGTCTCATGGCAT
TGCTGGGACAGGCATTGAAGTGGCAGCAGCACCAGGGATTGCTTCCTCCTGGTATGACCATCGATTTGTT
TCGAGGCAAGGCAGCTGTCAAAGATGTGGAAGAAGAGAAGTTTCCAACACAGTTGAGCAGGCATATTAAG
TTTGGACAGAAGTCCCACGTGGAGTGTGCTCGGTTCTCTCCAGATGGTCAGTATCTGGTCACTGGCTCTG
TTGATGGATTTATTGAGGTGTGGAACTTCACTACAGGGAAAATCAGGAAGGATCTGAAGTACCAGGCCCA
GGATAACTTCATGATGATGGATGATGCTGTTCTCTGCATGTGTTTCAGCAGAGATACTGAAATGTTAGCA
ACTGGGGCCCAAGATGGAAAGATCAAGGTTTGGAAGATTCAGAGTGGACAGTGTTTGAGAAGATTTGAAA
GGGCACATAGTAAAGGTGTCACCTGTCTAAGCTTTTCCAAGGACAGCAGTCAGATCCTCAGTGCTTCTTT
TGACCAGACAATACGAATTCATGGTTTAAAATCTGGAAAAACCCTGAAGGAATTTCGAGGCCATTCCTCC
TTTGTTAATGAAGCAACGTTTACACAGGATGGACATTACATTATCAGTGCGTCCTCTGATGGCACTGTGA
AGATCTGGAATATGAAGACCACAGAATGCTCAAATACCTTTAAGTCCCTGGGCAGTACTGCAGGGACAGA
TATTACAGTCAACAGTGTGATTCTGCTTCCTAAAAACCCAGAGCACTTCGTTGTGTGTAACCGATCGAAC
ACAGTGGTCATCATGAACATGCAGGGCCAGATCGTCAGAAGCTTCAGTTCTGGTAAAAGAGAGGGTGGTG
ACTTTGTTTGCTGTGCCTTGTCCCCTCGTGGCGAGTGGATCTACTGTGTTGGGGAGGACTTTGTGCTCTA
CTGCTTCAGCACAGTCACTGGCAAGCTGGAGAGAACGCTGACGGTTCATGAGAAGGATGTGATTGGAATC
GCACACCACCCGCACCAGAATTTGATTGCCACCTACAGTGAAGATGGCCTCCTGAAGCTCTGGAAACCCT
AA

Translation (513 aa):
MSIEIESSDVIRLIMQYLKENSLHRALATLQEETTVSLNTVDSIESFVADINSGHWDTVLQAIQSLKLPD
KTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENLLARSYFDPREAYPDGSSKEK
RRAAIAQALAGEVSVVPPSRLMALLGQALKWQQHQGLLPPGMTIDLFRGKAAVKDVEEEKFPTQLSRHIK
FGQKSHVECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLA
TGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQILSASFDQTIRIHGLKSGKTLKEFRGHSS
FVNEATFTQDGHYIISASSDGTVKIWNMKTTECSNTFKSLGSTAGTDITVNSVILLPKNPEHFVVCNRSN
TVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGI
AHHPHQNLIATYSEDGLLKLWKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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