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Report for CCDS37193.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37193.1 Public Mus musculus 15 Ddx23 23 108 98 CCDS HistoryNCBI Gene:74351Re-query CCDS DB by CCDS ID:37193.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37193.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003450.14 ENSMUSP00000003450.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003450.14Link to Ensembl Protein Viewer:ENSMUSP00000003450.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000003450Re-query CCDS DB by Protein ID:ENSMUSP00000003450
Original member Current member NCBI NM_001080981.1 NP_001074450.1 Accepted alive Link to Nucleotide Sequence:NM_001080981.1Link to Protein Sequence:NP_001074450.1Re-query CCDS DB by Nucleotide ID:NM_001080981Re-query CCDS DB by Protein ID:NP_001074450Link to BLAST:NP_001074450.1

Chromosomal Locations for CCDS 37193.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 98645794 98646017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98646344 98646518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98647163 98647271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98647474 98647625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98648487 98648729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98649715 98649892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98650144 98650289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98650593 98650818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98650913 98651056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98651244 98651356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98651465 98651598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98651918 98652056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98652473 98652538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98652888 98652981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98656602 98656712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98658230 98658435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2460 nt):
ATGGCAGGAGAACTGGCTGACAAAAAGGACCGAGACGCATCACCCAAGGAGGAAAGGAAGCGATCACGGA
CTCCTGAGAGAGATCGCGATAGAGACCGGGACCGGAAGTCCTCCCCATCTAAAGATAGGAAGCGGCATCG
CTCACGGGATAGGCGTAGAGGAGGGAGCCGTTCTCGCTCTCGGTCCCGTTCCAAGTCTGTAGAGAGGGAA
CGGCGGCACAAAGAGCGGGAGCGAGATAAGGAACGGGACCGGAGTAAGAAGGAGCGGGAGCGGGACAAGG
ATGGCCACCGACGGGACAAGGACCGAAAAAGATCCAGCTTGTCTCCTGGCCGAGGAAAGGATTTCAAGTC
TCGGAAGGACAGAGATTCTAAGAAGGGTGACGAGGATGAACATGGAGACAAGCGACCTAAGATCCAGCCA
CTGTCCCTGGAGGAACTTCTGGCCAAGAAAAAGGCTGAGGAGGAAGCTGAAGCTAAGCCCAAATTCCTCT
CTAAAGCAGAGCGGGAGGCTGAAGCTCTGAAGCGGCGGCAGCAGGAGGTGGAGGAGCGCCAGAAGATGCT
CGAAGAGGAGCGGAAGAAAAGGAAACAGTTCCAGGACCTGGGCAGGAAGATGCTGGAAGATCCTCAGGAA
AGGGAACGGAGAGAACGGAGGGAAAGGATGGAGCGGGAGACCAACGGAAATGAGGATGAGGAGGGGCGGC
AGAAGATCCGGGAAGAAAAGGACAAGAGCAAGGAGCTGCACGCCATTAAGGAGCGTTACCTGGGTGGCAT
CAAAAAACGGCGCCGAACAAGGCATCTCAATGACCGAAAGTTTGTGTTTGAGTGGGATGCGTCTGAAGAC
ACCTCCATTGATTACAACCCCCTGTATAAAGAACGACACCAGGTGCAGCTGTTGGGGCGAGGCTTCATTG
CAGGCATTGACCTAAAGCAGCAGAAGCGAGAGCAGTCACGTTTCTATGGAGACCTGATGGAGAAGAGGCG
AACCCTGGAGGAAAAGGAGCAGGAGGAAGCAAGACTCCGCAAACTTCGCAAAAAGGAGGCCAAGCAACGC
TGGGATGACCGCCATTGGTCCCAGAAGAAGTTGGATGAGATGACGGACAGGGACTGGCGGATCTTCCGTG
AAGATTACAGCATCACCACCAAAGGTGGCAAGATCCCCAATCCCATCCGGTCCTGGAAAGATTCGTCTCT
GCCCCCTCATATCCTGGAAGTCATTGATAAGTGTGGCTACAAGGAGCCAACACCTATCCAGCGTCAGGCC
ATTCCCATTGGGCTGCAGAATCGTGACATCATTGGTGTAGCTGAGACTGGCAGTGGCAAGACAGCAGCCT
TCCTCATCCCATTGCTAGTCTGGATCACCACACTTCCCAAGATTGACAGGATCGAAGAGTCAGACCAGGG
CCCTTATGCCATCATCCTGGCTCCTACCCGTGAGTTGGCTCAGCAGATTGAGGAAGAAACCATCAAGTTC
GGAAAGCCACTCGGTATCCGCACTGTGGCTGTCATCGGTGGCATCTCCAGAGAAGACCAAGGCTTCCGGC
TACGCATGGGCTGTGAGATTGTGATCGCCACCCCGGGGCGCCTGATCGATGTGCTGGAGAACCGGTACCT
GGTGCTGAGCCGCTGCACCTACGTGGTTCTGGATGAGGCGGATAGGATGATTGACATGGGCTTTGAGCCA
GATGTGCAGAAGATCCTGGAACACATGCCTGTCAGCAACCAGAAGCCGGACACAGATGAGGCTGAGGACC
CGGAGAAGATGTTGGCCAACTTTGAATCAGGAAAACATAAATACCGTCAAACAGTCATGTTCACGGCTAC
TATGCCCCCAGCGGTGGAGCGTCTAGCCAGGAGCTATCTTCGGCGACCTGCTGTGGTGTACATTGGCTCT
GCAGGCAAGCCCCATGAGCGGGTGGAACAGAAGGTCTTCCTCATGTCGGAATCAGAAAAGAGGAAGAAGC
TGCTGGCCATCTTGGAACAAGGTTTTGATCCGCCTATCATCATTTTTGTCAACCAGAAGAAGGGTTGTGA
TGTGTTGGCCAAGTCTCTGGAGAAGATGGGGTATAACGCCTGTACACTGCATGGCGGCAAAGGCCAGGAG
CAGCGAGAATTTGCATTGTCCAACCTCAAGGCTGGAGCCAAGGATATTTTGGTGGCTACAGATGTGGCTG
GCCGTGGTATTGATATCCAAGATGTGTCTATGGTTGTCAACTATGATATGGCCAAAAATATTGAAGATTA
CATTCACAGAATTGGCCGCACAGGAAGAGCGGGCAAGAGTGGCGTAGCCATCACCTTCCTCACCAAGGAG
GACTCAGCGGTGTTCTATGAACTGAAGCAGGCCATCCTGGAGAGCCCAGTGTCGTCCTGCCCTCCAGAGC
TGGCAAACCACCCAGATGCCCAGCACAAACCTGGCACCATCCTCACCAAGAAGCGCAGGGAAGAGACCAT
CTTTGCTTGA

Translation (819 aa):
MAGELADKKDRDASPKEERKRSRTPERDRDRDRDRKSSPSKDRKRHRSRDRRRGGSRSRSRSRSKSVERE
RRHKERERDKERDRSKKERERDKDGHRRDKDRKRSSLSPGRGKDFKSRKDRDSKKGDEDEHGDKRPKIQP
LSLEELLAKKKAEEEAEAKPKFLSKAEREAEALKRRQQEVEERQKMLEEERKKRKQFQDLGRKMLEDPQE
RERRERRERMERETNGNEDEEGRQKIREEKDKSKELHAIKERYLGGIKKRRRTRHLNDRKFVFEWDASED
TSIDYNPLYKERHQVQLLGRGFIAGIDLKQQKREQSRFYGDLMEKRRTLEEKEQEEARLRKLRKKEAKQR
WDDRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQA
IPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKF
GKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEP
DVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGS
AGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQE
QREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKE
DSAVFYELKQAILESPVSSCPPELANHPDAQHKPGTILTKKRREETIFA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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