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Report for CCDS23285.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23285.1 Public Mus musculus 9 Dpp8 23 108 98 CCDS HistoryNCBI Gene:74388Re-query CCDS DB by CCDS ID:23285.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23285.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034960.13 ENSMUSP00000034960.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034960.13Link to Ensembl Protein Viewer:ENSMUSP00000034960.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000034960Re-query CCDS DB by Protein ID:ENSMUSP00000034960
Original member Current member EBI ENSMUST00000167773.1 ENSMUSP00000126065.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167773.1Link to Ensembl Protein Viewer:ENSMUSP00000126065.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167773Re-query CCDS DB by Protein ID:ENSMUSP00000126065
Original member NCBI NM_028906.2 NP_083182.2 Updated not alive Link to Nucleotide Sequence:NM_028906.2Link to Protein Sequence:NP_083182.2Re-query CCDS DB by Nucleotide ID:NM_028906Re-query CCDS DB by Protein ID:NP_083182
Current member NCBI NM_028906.3 NP_083182.2 Accepted alive Link to Nucleotide Sequence:NM_028906.3Link to Protein Sequence:NP_083182.2Re-query CCDS DB by Nucleotide ID:NM_028906Re-query CCDS DB by Protein ID:NP_083182Link to BLAST:NP_083182.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083182.2 892 Q80YA7 892 100% 0 0

Chromosomal Locations for CCDS 23285.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 65034996 65035011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65036969 65037241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65042264 65042376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65043686 65043859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65045620 65045788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65051390 65051500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65053045 65053173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65053769 65053830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65054419 65054519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65054828 65055005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65055792 65055951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65060203 65060282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65063427 65063579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65063819 65063954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65066351 65066496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65074439 65074585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65075736 65075888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65077963 65078105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65078674 65078785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65080731 65080853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2679 nt):
ATGAAAATACCATCAGGAAGATGCAACATGGCAGCAGCAATGGAAACAGAACAGCTGGGTGTCGAGATAT
TTGAAACTGCAGAGTGTGAGGAGGGAAATGGTGAATCACAGGACCGACCCAAACTGGAGCCTTTTTATGT
CGAACGGTATTCTTGGAGTCAGCTGAAAAAGCTGCTTGCTGATACCAGAAAATACCACGGCTACATGATG
GCTAAGGCGCCACATGACTTTATGTTTGTAAAGAGGACGGATCCAGATGGGCCTCACTCAGACAGGGTCT
ATTACCTTGCCATGTCTGGTGAGAACAGAGAAAATACACTATTTTATTCTGAAATCCCTAAAACCATCAA
CAGAGCAGCAGTCTTAATGCTTTCCTGGAAGCCCCTTTTGGATCTTTTTCAGGCGACACTAGACTATGGG
ATGTATTCTCGAGAGGAAGAGCTACTCAGAGAAAGAAAGCGCATTGGAACCGTGGGGATCGCAGCTTATG
ATTACCACCCAGGAAGCGGAACATTCCTGTTTCAAGCTGGCAGCGGCATTTACCATATCAAAGATGGAGG
ACCACATGGATTTACACAACAGCCTTTGCGGCCCAATTTAGTGGAAACTAGTTGTCCCAATATACGAATG
GATCCAAAATTATGCCCTGCTGATCCAGACTGGATAGCTTTCATTCACAGCAATGATATTTGGATATCAA
ACCTCGTAACCAGGGAAGAGCGGAGGATCACATACGTACACAATGAGCTAGCCAACATGGAAGAGGATCC
CAGATCAGCTGGTGTTGCCACCTTTGTTCTTCAAGAAGAATTTGACAGATACTCTGGCTACTGGTGGTGT
CCCCAAGCGGAAAGAACTCCTAGTGGTGGTAAAATTCTTAGAATTCTCTATGAAGAAAATGATGAATCTG
AGGTGGAGATTATTCATGTTACGTCCCCCATGTTGGAAACAAGGAGGGCAGATTCCTTTCGTTATCCCAA
AACAGGCACAGCAAACCCAAAGGTCACTTTCAAGATGTCGGAGATTGTTGTTGATGCTGCAGGAGGGATT
ATAGATGTCATAGATAAAGAACTGGTTCAACCTTTCGAGATTCTGTTTGAGGGAGTTGAATATATTGCCA
GAGCCGGATGGACTCCAGAGGGAAAACATGCCTGGTCCATCCTACTAGACCGTTCCCAGACTCACCTGCA
GATAGTTCTGATCTCCCCTGAGTTATTCATCCCAGTAGAAGATGATGCCATGGACAGACAGAGACTTATA
GAGTCAGTTCCTGACTCTGTGACACCACTGATCATCTATGAAGAAACAACAGACATCTGGATAAATATCC
ACGATATTTTTCATGTTTTTCCTCAAACTCATGAAGATGAAATTGAGTTTATTTTTGCCTCTGAATGCAA
AACAGGTTTTCGTCATCTGTATAAAATCACATCCATTTTAAAGGAGAGCAAATATAAACGGTCCAGTGGT
GGACTACCTGCCCCAAGTGATTTCAAGTGTCCTATCAAAGAAGAAATAACAATTACCAGTGGTGAATGGG
AAGTACTTGGCCGGCATGGATCTAATATCTGGGTTGATGAAGCCAGAAAGCTGGTGTACTTTGAAGGCAC
CAAAGACTCTCCTTTGGAGCATCACCTGTACGTGACCAGTTATGCAAACCCTGGAGAAGTGGTGAGGCTG
ACTGACCGTGGCTACTCACACTCCTGCTGCCTCAGCCGGCATTGTGACTTCTTCATAAGTAAGTACAGCA
ACCAGAAGAATCCACACTGTGTGTCCCTCTACAAACTCTCAAGTCCTGAGGATGACCCAGTTCATAAAAC
AAAGGAATTTTGGGCCACCATTTTGGATTCAGCAGGTCCTCTTCCTGACTACACCCCTCCAGAAATTTTT
TCTTTTGAAAGTACTACTGGATTTACACTGTATGGAATGTTGTATAAGCCTCATGACCTACAACCTGGAA
AGAAATACCCCACTGTGTTATTCATATATGGTGGTCCCCAGGTGCAGCTGGTGAACAATCGGTTTAAAGG
AGTCAAGTATTTCCGCCTGAACACCCTGGCCTCCCTGGGTTATGTGGTTGTGGTGATAGACAACAGGGGA
TCCTGTCACCGAGGACTTAAATTTGAAGGCGCCTTTAAATATAAAATGGGTCAAATAGAAATCGATGATC
AAGTGGAAGGACTCCAGTACCTAGCATCTCAGTATGACTTCATTGACTTGGATCGAGTGGGCATCCACGG
CTGGTCCTATGGTGGCTACCTCTCCCTGATGGCATTAATGCAGAGGTCGGATATCTTCCGGGTGGCTATT
GCTGGGGCCCCAGTCACCCTGTGGATCTTCTATGATACAGGATACACGGAGCGCTATATGGGTCACCCTG
ACCAGAATGAACAGGGCTACTACTTAGGATCTGTGGCCATGCAAGCGGAGAAGTTCCCCTCAGAACCAAA
CCGGTTACTCCTCTTGCATGGGTTCTTGGATGAGAATGTTCACTTTGCACACACCAGTATATTGCTGAGT
TTTTTAGTGAGGGCTGGAAAGCCATATGACTTACAGATCTATCCTCAGGAGAGGCACAGCATCAGAGTTC
CTGAGTCTGGAGAACACTATGAACTGCACCTGCTCCACTACCTTCAGGAGAACCTTGGATCGCGTATCGC
TGCTCTGAAAGTGATATAA

Translation (892 aa):
MKIPSGRCNMAAAMETEQLGVEIFETAECEEGNGESQDRPKLEPFYVERYSWSQLKKLLADTRKYHGYMM
AKAPHDFMFVKRTDPDGPHSDRVYYLAMSGENRENTLFYSEIPKTINRAAVLMLSWKPLLDLFQATLDYG
MYSREEELLRERKRIGTVGIAAYDYHPGSGTFLFQAGSGIYHIKDGGPHGFTQQPLRPNLVETSCPNIRM
DPKLCPADPDWIAFIHSNDIWISNLVTREERRITYVHNELANMEEDPRSAGVATFVLQEEFDRYSGYWWC
PQAERTPSGGKILRILYEENDESEVEIIHVTSPMLETRRADSFRYPKTGTANPKVTFKMSEIVVDAAGGI
IDVIDKELVQPFEILFEGVEYIARAGWTPEGKHAWSILLDRSQTHLQIVLISPELFIPVEDDAMDRQRLI
ESVPDSVTPLIIYEETTDIWINIHDIFHVFPQTHEDEIEFIFASECKTGFRHLYKITSILKESKYKRSSG
GLPAPSDFKCPIKEEITITSGEWEVLGRHGSNIWVDEARKLVYFEGTKDSPLEHHLYVTSYANPGEVVRL
TDRGYSHSCCLSRHCDFFISKYSNQKNPHCVSLYKLSSPEDDPVHKTKEFWATILDSAGPLPDYTPPEIF
SFESTTGFTLYGMLYKPHDLQPGKKYPTVLFIYGGPQVQLVNNRFKGVKYFRLNTLASLGYVVVVIDNRG
SCHRGLKFEGAFKYKMGQIEIDDQVEGLQYLASQYDFIDLDRVGIHGWSYGGYLSLMALMQRSDIFRVAI
AGAPVTLWIFYDTGYTERYMGHPDQNEQGYYLGSVAMQAEKFPSEPNRLLLLHGFLDENVHFAHTSILLS
FLVRAGKPYDLQIYPQERHSIRVPESGEHYELHLLHYLQENLGSRIAALKVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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