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Report for CCDS51010.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51010.1 Public Mus musculus 3 Polr3c 23 108 98 CCDS HistoryNCBI Gene:74414Re-query CCDS DB by CCDS ID:51010.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51010.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029741.8 ENSMUSP00000029741.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029741.8Link to Ensembl Protein Viewer:ENSMUSP00000029741.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000029741Re-query CCDS DB by Protein ID:ENSMUSP00000029741
Original member Current member EBI ENSMUST00000154679.7 ENSMUSP00000122435.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000154679.7Link to Ensembl Protein Viewer:ENSMUSP00000122435.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000154679Re-query CCDS DB by Protein ID:ENSMUSP00000122435
Original member NCBI NM_028925.1 NP_083201.1 Updated not alive Link to Nucleotide Sequence:NM_028925.1Link to Protein Sequence:NP_083201.1Re-query CCDS DB by Nucleotide ID:NM_028925Re-query CCDS DB by Protein ID:NP_083201
Current member NCBI NM_028925.2 NP_083201.1 Accepted alive Link to Nucleotide Sequence:NM_028925.2Link to Protein Sequence:NP_083201.1Re-query CCDS DB by Nucleotide ID:NM_028925Re-query CCDS DB by Protein ID:NP_083201Link to BLAST:NP_083201.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083201.1 533 Q9D483-1 533 100% 0 0

Chromosomal Locations for CCDS 51010.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 96711979 96712060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96713481 96713630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96714095 96714144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96714259 96714360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96715120 96715270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96715634 96715694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96716429 96716480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96716667 96716747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96719234 96719326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96719461 96719565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96722540 96722625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96723514 96723699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96723797 96724052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96725834 96725980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1602 nt):
ATGACTCAAGCAGAGATTAAACTGTGTTCTTTGTTGCTGCAAGAGCATTTTGGTGAGATTGTAGAAAAAA
TTGGAGTCCACCTAGTCAGAACTGGAAGCCAGCCACTTAGAGTAATTGCCCACGACACAAAAGCATCCCT
GGACCAGGTGAAAAAAGCCCTTTGTGTCCTCATTCACCACAACCTGGTCCTCTATCATGTGCACAAGCGC
GGTGTGGTGGAGTATGAAGCCCAGTGCAGCCGGGTACTGAGGATGCTTAGGTATCCCCGGTACATCTACA
CCACCAAAACGCTGTACGGTGACACCGGAGAGCTGATTGTTGAGGAGCTCCTGCTGAATGGCAAAATGAC
AATGTCAGCTGTTGTGAAGAAAGTAGCCGACCGACTCACAGAGACCATGGAGGATGGCAAGACCATGGAC
TACGCTGAGGTATCAAATGCATTTGTGCGACTGGCAGATACTCACTTTGTACAGCGCTGTCCCCTGGTTC
CTGACACTGACAGTTCTGACCGTGGGCCACCGCCACCCGCCCCAACCCTTGTCATTAATGAAAAGGACAT
GTACCTAGTTCCCAAACTGAGCTTGATAGGAAAAGGTAAGAGGAGGAGATCATCTGATGAAGATGCTACT
GGAGAGCCCAAGGCCAAGAAACCAAGATACACAGATAACAAGGAGCCCTCACCAGACGATGGGATTTATT
GGCAAGTCAACCTCGACAGGTTCCACCAGCACTTCCGTGACCAAGCAATCGTGAGCGCAGTGGCAAACCG
AATGGACCAGACAAGCAGCGAGATCGTGCGGACGATGCTCCGGATGAGTGAGATCACCACTCCCTCTAGC
GCCCCCTATACTCAGCCGCTGTCCTCCAATGAGATCTTCAGGTCCCTGCCCGTCGGATATAACATCTCTA
AACAGGTTCTCGATCAGTACCTCACGCTGCTGGCAGATGACCCACTAGAGTTTATTGGAAAGTCTGGCGA
CAGTGGCGGAGGAATGTTTGTCATCAACCTCCATAAAGCATTAGCGTCCCTAGCCACTGCAACTCTGGAG
TCTGTCATCCAGGAGAGATTCGGGTCTCGCTGTGCCAGGATATTCCGTCTGGTATTGCAGAAGAAACACC
TTGAGCAGAAGCAGGTGGAGGACTTTGCAATGATCCCTGCGAAGGAGGCAAAGGACATGCTGTACAAGAT
GCTCTCGGAAAACTTCATCCTGCTGCAGGAAATTCCTAAGACGCCAGACCACGCCCCGTCCAGGACCTTC
TATCTGTACACTGTGAATGTGCTCTCAGCTGCCAGGATGCTGTTGCACAGGTGCTATAAGAGCATAGCCA
ACTTGATAGAACGGCGACAGTTTGAAACAAAGGAGAACAAGCGGCTACTAGAAAAGTCTCAGCGGGTGGA
AGCCATCATGGCATCCATGCAGGCCACGGGTGCAGAGGAGGTGCAGCTGCAGGAGATAGAGGAGATGATC
ACAGCCCCCGAGCGGCAGCAGCTGGAGACACTGAAACGCAACGTTAACAAGTTGGACGCCAGTGAGATCC
AGGTGGATGAAACCATCTTCTTACTGGAATCATACATTGAGAGCACCATGAAGAGGCAGTGA

Translation (533 aa):
MTQAEIKLCSLLLQEHFGEIVEKIGVHLVRTGSQPLRVIAHDTKASLDQVKKALCVLIHHNLVLYHVHKR
GVVEYEAQCSRVLRMLRYPRYIYTTKTLYGDTGELIVEELLLNGKMTMSAVVKKVADRLTETMEDGKTMD
YAEVSNAFVRLADTHFVQRCPLVPDTDSSDRGPPPPAPTLVINEKDMYLVPKLSLIGKGKRRRSSDEDAT
GEPKAKKPRYTDNKEPSPDDGIYWQVNLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMSEITTPSS
APYTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFIGKSGDSGGGMFVINLHKALASLATATLE
SVIQERFGSRCARIFRLVLQKKHLEQKQVEDFAMIPAKEAKDMLYKMLSENFILLQEIPKTPDHAPSRTF
YLYTVNVLSAARMLLHRCYKSIANLIERRQFETKENKRLLEKSQRVEAIMASMQATGAEEVQLQEIEEMI
TAPERQQLETLKRNVNKLDASEIQVDETIFLLESYIESTMKRQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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