NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17340.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17340.1 Public Mus musculus 3 Naa15 23 108 98 CCDS HistoryNCBI Gene:74838Re-query CCDS DB by CCDS ID:17340.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17340.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029303.12 ENSMUSP00000029303.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029303.12Link to Ensembl Protein Viewer:ENSMUSP00000029303.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029303Re-query CCDS DB by Protein ID:ENSMUSP00000029303
Original member Current member NCBI NM_053089.3 NP_444319.3 Accepted alive Link to Nucleotide Sequence:NM_053089.3Link to Protein Sequence:NP_444319.3Re-query CCDS DB by Nucleotide ID:NM_053089Re-query CCDS DB by Protein ID:NP_444319Link to BLAST:NP_444319.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444319.3 865 Q80UM3 865 99.6532% 0 3

Chromosomal Locations for CCDS 17340.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 51416323 51416376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51436215 51436299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51438339 51438443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51441906 51442063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51442736 51442870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51443798 51443951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51446647 51446766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51448341 51448436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51448553 51448659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51451310 51451382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51455834 51456003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51457298 51457450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51458622 51458750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51459947 51460160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51461084 51461277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51463264 51463372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51465594 51465692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51470086 51470229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51471485 51471582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51472600 51472800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2598 nt):
ATGCCGGCCGTGAGCCTCCCGCCCAAGGAGAACGCGCTCTTCAAGCGGATCTTGAGATGTTATGAACATA
AACAGTATAGAAATGGATTGAAGTTCTGTAAACAAATCCTTTCCAATCCCAAATTTGCAGAGCATGGAGA
AACCCTGGCTATGAAAGGATTAACGTTGAACTGTTTGGGAAAAAAGGAAGAAGCTTATGAATTGGTTCGC
AGAGGTTTGAGAAATGACTTAAAGAGTCATGTGTGTTGGCATGTTTATGGCCTTCTTCAAAGGTCAGACA
AGAAGTATGATGAAGCCATTAAGTGCTACAGAAATGCACTGAAATGGGATAAAGACAATCTTCAGATCTT
AAGAGATCTTTCCTTACTGCAGATTCAAATGCGAGATCTTGAGGGCTATAGGGAAACAAGATACCAGTTG
CTTCAGCTTCGGCCTGCACAGAGAGCATCATGGATTGGTTATGCTATTGCTTACCATTTATTAGAAGACT
ATGAAATGGCAGCAAAAATTTTAGAAGAGTTTAGGAAAACACAGCAGACATCTCCTGATAAAGTGGATTA
TGAATATAGTGAACTCCTCTTATATCAGAATCAAGTTCTTCGGGAAGCAGGTCTTTATAGAGAAGCCCTG
GAACATCTTTGTACCTATGAAAAGCAGATTTGTGATAAACTTGCTGTTGAAGAAACCAAAGGGGAACTTC
TGTTGCAGTTGTGTCGTTTGGAAGATGCTGCTGACGTTTATAGAGGATTACAAGAGAGGAATCCTGAAAA
TTGGGCCTATTACAAAGGCTTAGAAAAAGCACTGAAGCCAGCTAATATGTTAGAACGGCTAAAAATATAT
GAGGAAGCCTGGACTAAATACCCCAGGGGACTCGTGCCAAGAAGGCTGCCCTTAAACTTTTTATCTGGAG
AGAAGTTTAAGGAGTGTTTGGATAGGTTCCTAAGGATGAATTTCAGCAAGGGCTGTCCACCTGTCTTCAA
TACCTTGAGGTCTTTATACAGAGATAAAGAGAAGGTGGCAATCGTAGAAGAACTAGTAGTTGGTTATGAA
ACTTCTCTAAAAAGTTGTCGCCTATTTAACCCCAATGATGATGGAAAGGAGGAACCTCCAACCACATTAC
TTTGGGTCCAGTACTATTTGGCACAGCATTATGATAAAATTGGTCAGCCATCCATTGCTCTGGAATACAT
AAATACTGCAATTGAAAGTACACCAACATTGATAGAACTCTTTCTTGTAAAAGCTAAAATCTATAAGCAT
GCTGGGAATATTAAAGAAGCTGCCAGGTGGATGGATGAAGCCCAGGCCCTGGACACAGCAGACAGATTTA
TTAATTCCAAGTGTGCAAAATACATGTTAAAAGCCAACCTGATTAAAGAGGCTGAAGAAATGTGTTCCAA
GTTTACGAGGGAAGGAACTTCAGCGGTAGAGAACCTGAATGAAATGCAGTGTATGTGGTTCCAGACAGAG
TGTGCTCAGGCATACAAAGCAATGAACAAATTTGGTGAAGCACTTAAGAAATGTCATGAAATTGAGAGAC
ATTTTATAGAAATCACCGATGACCAGTTTGACTTTCATACATACTGTATGAGGAAGATCACCCTTAGATC
ATATGTGGACTTATTAAAACTAGAAGATGTACTTCGACAGCATCCATTTTACTTCAAAGCAGCGAGGATT
GCTATTGAGATCTATTTGAAGCTTCATGACAACCCTCTGACAGATGAGAACAAAGAACACGAGGCTGATA
CAGCAAACATGTCTGACAAAGAGCTAAAGAAACTGCGTAATAAACAAAGAAGAGCTCAAAAGAAAGCCCA
GATAGAAGAAGAGAAAAAAAATGCAGAAAAAGAAAAGCAGCAACGGAATCAGAAAAAGAAAAAGGATGAT
GATGACGAAGAAATTGGAGGCCCCAAAGAAGAGCTTATCCCTGAGAAACTGGCCAAGGTTGAAACTCCAT
TGGAAGAAGCTATTAAGTTTTTAACACCATTGAAGAACTTGGTGAAGAACAAGATAGAAACTCATCTTTT
TGCCTTTGAGATCTACTTTAGGAAAGAAAAGTTTCTTTTGATGCTACAATCAGTAAAGCGGGCATTTGCT
ATTGATTCTAGTCATCCCTGGCTTCATGAGTGCATGATTCGACTCTTTCATTCTGTGTGTGAAAGTAAAG
ACTTACCCGAAACAGTTAGAACAGTATTAAAACAAGAAATGAATCGTCTTTTTGGAGCAACAAATCCAAA
GAATTTTAATGAAACCTTTCTGAAAAGGAATTCTGATTCATTGCCACATAGATTATCAGCTGCCAAAATG
GTATATTATTTAGATTCTTCTAGTCAAAAACGAGCAATAGAGCTGGCGACAACACTTGATGGATCCCTCA
CCAACAGAAACCTTCAGACTTGCATGGAGGTGTTGGAAGCCTTGTGTGATGGTAGCCTAGGAGACTGTAA
AGAAGCTGCCGAAGCCTACAGAGCAAGTTGTCATAAGCTTTTCCCTTATGCTTTGGCTTTCATGCCTCCT
GGATACGAAGAGGATATGAAGATCACAGTGAACGGAGATAGTTCTGCAGAAACGGAAGAACTGGCCAATG
AAATCTGA

Translation (865 aa):
MPAVSLPPKENALFKRILRCYEHKQYRNGLKFCKQILSNPKFAEHGETLAMKGLTLNCLGKKEEAYELVR
RGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWDKDNLQILRDLSLLQIQMRDLEGYRETRYQL
LQLRPAQRASWIGYAIAYHLLEDYEMAAKILEEFRKTQQTSPDKVDYEYSELLLYQNQVLREAGLYREAL
EHLCTYEKQICDKLAVEETKGELLLQLCRLEDAADVYRGLQERNPENWAYYKGLEKALKPANMLERLKIY
EEAWTKYPRGLVPRRLPLNFLSGEKFKECLDRFLRMNFSKGCPPVFNTLRSLYRDKEKVAIVEELVVGYE
TSLKSCRLFNPNDDGKEEPPTTLLWVQYYLAQHYDKIGQPSIALEYINTAIESTPTLIELFLVKAKIYKH
AGNIKEAARWMDEAQALDTADRFINSKCAKYMLKANLIKEAEEMCSKFTREGTSAVENLNEMQCMWFQTE
CAQAYKAMNKFGEALKKCHEIERHFIEITDDQFDFHTYCMRKITLRSYVDLLKLEDVLRQHPFYFKAARI
AIEIYLKLHDNPLTDENKEHEADTANMSDKELKKLRNKQRRAQKKAQIEEEKKNAEKEKQQRNQKKKKDD
DDEEIGGPKEELIPEKLAKVETPLEEAIKFLTPLKNLVKNKIETHLFAFEIYFRKEKFLLMLQSVKRAFA
IDSSHPWLHECMIRLFHSVCESKDLPETVRTVLKQEMNRLFGATNPKNFNETFLKRNSDSLPHRLSAAKM
VYYLDSSSQKRAIELATTLDGSLTNRNLQTCMEVLEALCDGSLGDCKEAAEAYRASCHKLFPYALAFMPP
GYEEDMKITVNGDSSAETEELANEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH