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Report for CCDS40963.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40963.1 Public Mus musculus X Arhgap36 23 108 98 CCDS HistoryNCBI Gene:75404Re-query CCDS DB by CCDS ID:40963.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40963.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114904.9 ENSMUSP00000110554.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114904.9Link to Ensembl Protein Viewer:ENSMUSP00000110554.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000114904Re-query CCDS DB by Protein ID:ENSMUSP00000110554
Original member Current member NCBI NM_001081123.2 NP_001074592.1 Accepted alive Link to Nucleotide Sequence:NM_001081123.2Link to Protein Sequence:NP_001074592.1Re-query CCDS DB by Nucleotide ID:NM_001081123Re-query CCDS DB by Protein ID:NP_001074592Link to BLAST:NP_001074592.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074592.1 590 B1AUC7-1 590 100% 0 0

Chromosomal Locations for CCDS 40963.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 49470607 49470664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49493286 49493444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49494646 49494711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49495242 49495477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49495672 49495864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49496105 49496160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49496441 49496591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49497084 49497232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49497375 49497551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49497737 49497834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49497958 49498064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49498470 49498640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49498990 49499141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1773 nt):
ATGGCGTGGATGCTGGACTGCCTATTCGCATCGGCCTTTGAGCCCCGCCCCCGCCGTGTGAGCGTCCTGG
GAGGAGCCCCAGGACAGAACTCAGACCGCAGCATGGACATGGTATCCATTCACAGCCTCTCTGAGCTGGA
GCGCCTGAAGCTGCAAGAGACTGCTTACCACGAACTCGTGGCCAGACATTTCCTCTCTGAATTCAAGCCG
GACAGAGCTCTACCCACTGACCGTCCAAACACCCTGGAGAAGTGGTTTTTGATGCTGAGAGGACAAGACA
GGGCTGCATCACTCAAGACCTTTGGCATCCGCCTGGAAGAGGTACTGGTGAACGAGCTTACCCGTCGCAA
GCAGCGTGAACTGACACCCACGATGCAGGTTGAAGATATCAACGGTTCTACTGGTCGTCGTCGTCGGGGA
AACGTGGTGCAAAGAATGCTTGGACGCATGAGGCGCTTTTTCAGTCGCAGGAGGAATGAGCCCACCCTGC
CTAGAGAGTTCACTCGCCGTGGACGTCGAGGTGCAGTTTCTGCAGATAGCGCAGATGAACTGGAGAACGG
AGCCCTGCTGCTGCAGATCCTGCAGCTCTCCCAGCTTTCATCGCCTATTGGACAGCGGCTTCTGGGATCC
AAGAGGAAGATGAGCCTCAACCCAATTGCTCAACAAATCCCTCAGATTGTTGAGACTTGTTGCAAATTCA
TTGAGAAACATGGCTTAAGCTCAGTGGGGATTTTCACCATTGAATACTCTCTGCGGAGGGTGCTTGAGCT
CCGTGAGTTATTTGACAAAGGCCTGGATATTGTACTGGATGACAGTGTGAATGTCCATGATGTGGCTGAG
CTCCTCAAGGAGTTTTTTCGTGAGATGAAGGACCCTCTGCTGCCTGATGATCTGTACATGTCCTTCCTCC
TGACTGCAACTCTGAAGCCCAAGGATCAGGTTTCTGCCCTGCAGCTTCTGGTTTATCTGATGCCACCTTG
CCACAGTGATACTCTCGAACGTCTGCTGAAGGCTCTGCATAAAATCACTGAGAACTGTGAAGACTCCATT
GGCGTTGATGGACAGCTGGTTCCAGGTAACCGAATGACTTCCACCAACTTGGCTTTGGTGTTTGGAACTG
CTCTCCTGAAGAAGGGGAAGTTGGCCAACAAGGAATCCAGGAAGACTAAACTGGGGATTGATCACTATGT
TGCATCTGTCAATGTTGTCCGTGCCATGATTGATAACTGGGACATCCTCTTCCAGGTGCCCCCCCATATT
CAGAAGGAGGTTGCTAAGCGTGTGTGGAAGTCCAGCCCTGAAGCCCTGGATTTTATCAGACGCCGGAATC
TGAGGAAGATCCAGAGTGCTCGCATAAAGATGGAAGAGGATGCTTTACTTTCTGATCCAGTGGAAAACTC
TGCTGAAGCCCAGGCTGCTATCCTTGCTCAGAGCCAGCCCTTTGATGAAGACCCCGAAGGAGCCCCAGAT
GTGCACGAGGTCTTGAATGATAACCTGAACTATGACTTTGAAGACGAATCGGATTTTGAAGACCAGGACC
ATCTGGATCTTGCAGAGGTTCCCTATCTTGATGTAATTCCAAACAACGAAGATACCGACTCAGACGCTGA
TGTAATCCCAGGTCCCTCTGAGGAGCCTGCTGTGCCTGCCAGCACTGCTGGTTCCCCTGACAAAGAGGAA
GGAGCAGCCGGTAACCCCCCCAACGCAGACCGCCCACTGCCCCGTGTGCCCCAGGGGAAGAAGGGCAAAT
TTGCCACCCGCTTCTTTCCTTAG

Translation (590 aa):
MAWMLDCLFASAFEPRPRRVSVLGGAPGQNSDRSMDMVSIHSLSELERLKLQETAYHELVARHFLSEFKP
DRALPTDRPNTLEKWFLMLRGQDRAASLKTFGIRLEEVLVNELTRRKQRELTPTMQVEDINGSTGRRRRG
NVVQRMLGRMRRFFSRRRNEPTLPREFTRRGRRGAVSADSADELENGALLLQILQLSQLSSPIGQRLLGS
KRKMSLNPIAQQIPQIVETCCKFIEKHGLSSVGIFTIEYSLRRVLELRELFDKGLDIVLDDSVNVHDVAE
LLKEFFREMKDPLLPDDLYMSFLLTATLKPKDQVSALQLLVYLMPPCHSDTLERLLKALHKITENCEDSI
GVDGQLVPGNRMTSTNLALVFGTALLKKGKLANKESRKTKLGIDHYVASVNVVRAMIDNWDILFQVPPHI
QKEVAKRVWKSSPEALDFIRRRNLRKIQSARIKMEEDALLSDPVENSAEAQAAILAQSQPFDEDPEGAPD
VHEVLNDNLNYDFEDESDFEDQDHLDLAEVPYLDVIPNNEDTDSDADVIPGPSEEPAVPASTAGSPDKEE
GAAGNPPNADRPLPRVPQGKKGKFATRFFP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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