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Report for CCDS49703.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49703.1 Public Mus musculus 15 Syce3 23 108 98 CCDS HistoryNCBI Gene:75459Re-query CCDS DB by CCDS ID:49703.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49703.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109314.8 ENSMUSP00000104937.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109314.8Link to Ensembl Protein Viewer:ENSMUSP00000104937.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109314Re-query CCDS DB by Protein ID:ENSMUSP00000104937
Original member Current member EBI ENSMUST00000167959.1 ENSMUSP00000131766.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167959.1Link to Ensembl Protein Viewer:ENSMUSP00000131766.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167959Re-query CCDS DB by Protein ID:ENSMUSP00000131766
Original member Current member NCBI NM_001162880.1 NP_001156352.1 Accepted alive Link to Nucleotide Sequence:NM_001162880.1Link to Protein Sequence:NP_001156352.1Re-query CCDS DB by Nucleotide ID:NM_001162880Re-query CCDS DB by Protein ID:NP_001156352Link to BLAST:NP_001156352.1
Original member Current member NCBI NM_001162882.1 NP_001156354.1 Accepted alive Link to Nucleotide Sequence:NM_001162882.1Link to Protein Sequence:NP_001156354.1Re-query CCDS DB by Nucleotide ID:NM_001162882Re-query CCDS DB by Protein ID:NP_001156354Link to BLAST:NP_001156354.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156352.1 88 B5KM66 88 100% 0 0
NP_001156354.1 88 B5KM66 88 100% 0 0

Chromosomal Locations for CCDS 49703.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 89390282 89390439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89397326 89397434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (267 nt):
ATGGCTGATTCCGATCCTGGGGAAAGAAGCTATGATAACATGCTGAAAATGCTGTCTGACCTGAACAAGG
ACCTGGAAAAGCTATTGGAAGAGATGGAAAAAATCTCAGTGCAGGCAACCTGGATGGCCTATGATATGGT
GGTCATGCGTACGAACCCCACACTAGCAGAGTCCATGCGCCGGCTAGAAGACGCCTTCCTCAACTGCAAA
GAGGAGATGGAGAAGAACTGGCAAGAGCTGCTCACTGAGACCAAGCGCAAGCAGTGA

Translation (88 aa):
MADSDPGERSYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFLNCK
EEMEKNWQELLTETKRKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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